annotated transcriptome assembly (LabArchives LLC)
90
Structured Review
LabArchives LLC
annotated transcriptome assembly
Annotated Transcriptome Assembly, supplied by LabArchives LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomic+libraries/transcriptome+libraries/pmc04232415-256-5-8
Average 90 stars, based on 1 article reviews
Annotated Transcriptome Assembly, supplied by LabArchives LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomic+libraries/transcriptome+libraries/pmc04232415-256-5-8
Average 90 stars, based on 1 article reviews
annotated transcriptome assembly - by Bioz Stars,
2026-11
90/100 stars
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1) Product Images from "Sequencing, Annotation and Analysis of the Syrian Hamster ( Mesocricetus auratus ) Transcriptome"
Article Title: Sequencing, Annotation and Analysis of the Syrian Hamster ( Mesocricetus auratus ) Transcriptome
Journal: PLoS ONE
doi: 10.1371/journal.pone.0112617
Figure Legend Snippet: (A) The length distribution of the reads is shown in a gray histogram. Bins of the histogram have been set to 50 nucleotides. The lengths of the reads range from 40 to 631, with a median length of 387 and a mean length of 352. The reads represents a total of 426,683,712 nucleotides bases. (B) The length distribution of the 111,796 singletons is shown in a red histogram while the length distribution of the 62,482 contigs is shown in a blue histogram. Bins of the histograms have been set to 25 nucleotides. The lengths of the singleton sequences range from 50 to 614, with a median length of 187 and a mean length of 265. The lengths of the contig sequences range from 50 to 4,054, with a median length of 473 and a mean length of 487. Our Syrian hamster transcriptome represents a total of 60,117,204 nucleotides bases.
Techniques Used:
Figure Legend Snippet: Transcriptome references and alignment statistics.
Techniques Used:
Figure Legend Snippet: Functional enrichment of the mouse genes mapped by our transcriptome assembly.
Techniques Used: Functional Assay, Ubiquitin Proteomics
Figure Legend Snippet: (A) Distogram showing the number of transcripts commonly mapped by the Syrian hamster transcriptome between the different species used in this study. Each cell of the distogram represents the number of transcripts commonly mapped by two different species using a gradient color. (B) Phylogenetic tree showing the genomic divergence between a subset of the different species used in this study. Each leaf of the tree represents a different species and the distances of the edges are proportional to the genomic distances between the species. Genomic distances have been calculated based on the list of 611 Syrian hamster contigs and singletons that have been commonly aligned on the transcriptome references of the 13 species having the highest number of commonly aligned sequences.
Techniques Used:
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