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Broad Institute Inc transcriptome data
Transcriptome Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomic+data/transcriptome+data/pmc10973470-371-0-15
Average 90 stars, based on 1 article reviews
transcriptome data - by Bioz Stars, 2026-09
90/100 stars

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other:

Article Title: CardiOmics signatures reveal therapeutically actionable targets and drugs for cardiovascular diseases
Article Snippet: To extend this field, we implemented an exhaustive integration of three transcriptomic datasets related to various heart diseases, all sourced from the Broad Institute's Single Cell Portal.

Software:

Article Title: Synthetic biology approach revealed enhancement in haeme oxygenase-1 gene expression by codon pair optimization while reduction by codon deoptimization
Article Snippet: .. The software uses transcriptome data from Broad Institute Genotype-Tissue Expression (GTEx) portal. ..

Expressing:

Article Title: Synthetic biology approach revealed enhancement in haeme oxygenase-1 gene expression by codon pair optimization while reduction by codon deoptimization
Article Snippet: .. The software uses transcriptome data from Broad Institute Genotype-Tissue Expression (GTEx) portal. ..

Gene Expression:

Article Title: HABiC: an algorithm based on the exact computation of the Kantorovich-Rubinstein optimizer for binary classification in transcriptomics
Article Snippet: .. Transcriptomics data were downloaded from the public repositories cBioPortal ( https://www.cbioportal.org ), Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo ), Broad Institute ( https://singlecell.broadinstitute.org ) or Zenodo ( https://zenodo.org ). ..

Article Title: A transcriptomic intratumour heterogeneity-free signature overcomes sampling bias in prognostic risk classification for hepatocellular carcinoma
Article Snippet: For the MultiRArray cohort, raw CEL files of Agilent 4×44 K Whole Human Genome Oligo microarrays were downloaded from the NCBI's Gene Expression Omnibus (GEO) (accession number: GSE92528; Platform: GPL6480; https://www.ncbi.nlm.nih.gov/geo/). .. HCC cohorts with survival information and gene expression data For the TCGA-LIHC cohort, transcriptome data of 373 liver cancer specimens (including 371 primary and 2 recurrent tumoral specimens) and 50 corresponding normal specimens from 371 patients were downloaded from Broad Institute's GDAC Firehose (https://gdac.broadinstitute.org). ..



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a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) Transcriptomic data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.

Journal: bioRxiv

Article Title: Elevated temperature drives the biosynthesis of novel acylated glucosinolates in Arabidopsis thaliana seeds

doi: 10.64898/2026.06.03.729804

Figure Lengend Snippet: a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) Transcriptomic data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.

Article Snippet: Untargeted metabolomic raw data (.mzXML) for both negative and positive ESI modes, and metadata have been deposited at the MassiVE data repository portal with the following identifiers: The transcriptomic RNA-Seq raw data (FASTQ) have been deposited at the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly Sequence Database (TSA) with BioProject identification PRJNA1344327.

Techniques: Control, Metabolomic