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Human Protein Atlas cell transcriptomic data
Cell Transcriptomic Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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cell transcriptomic data - by Bioz Stars, 2026-10
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Clinical Proteomics:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Identification of cell type-enriched plasma proteins The Human Protein Atlas single-cell RNA-seq database (Human Protein Atlas version 24.1 www.proteinatlas.org/humanproteome) was used to map the putative cell type-specific plasma proteome. ..

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 1 | Identification of cell type-specific plasma proteins. (a) Z-scored gene expression of cell type-enriched plasma protein encoding genes in the Human Protein Atlas (HPA, version 24.1) single-cell transcriptomics dataset, labeled by cell type and grouped according to HPA cell type family categorizations. (b) Coverage of cell type-specific proteins across the 7,289 proteins measured by the 7k SomaScan platform. (c) Coverage of cell typespecific proteins across the 2,923 proteins measured by the 3k Olink platform. ..

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Leveraging single-cell transcriptomic data in the Human Protein Atlas (Methods and Extended Data Fig. 1), we linked 60 cell types to their corresponding plasma proteins. ..

Single Cell:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Identification of cell type-enriched plasma proteins The Human Protein Atlas single-cell RNA-seq database (Human Protein Atlas version 24.1 www.proteinatlas.org/humanproteome) was used to map the putative cell type-specific plasma proteome. ..

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 2 | Enrichment profile examples of cell type-specific proteins. (a) Fold change of enriched proteins for pancreatic endocrine cells based on the Human Protein Atlas single-cell transcriptomic dataset (version 24.1): blue bars represent fold change compared to average expression across all other cell types; red bars show fold change relative to the second-highest expressing cell type. ..

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 1 | Identification of cell type-specific plasma proteins. (a) Z-scored gene expression of cell type-enriched plasma protein encoding genes in the Human Protein Atlas (HPA, version 24.1) single-cell transcriptomics dataset, labeled by cell type and grouped according to HPA cell type family categorizations. (b) Coverage of cell type-specific proteins across the 7,289 proteins measured by the 7k SomaScan platform. (c) Coverage of cell typespecific proteins across the 2,923 proteins measured by the 3k Olink platform. ..

Article Title: Neuroprotective effects of Chaihu-Longgu-Muli Decoction in an insomnia-depression comorbidity model via Galectin-3-dependent JAK2/STAT3 inhibition.
Article Snippet: 21 Ethnopharmacological relevance: Chaihu-Longgu-Muli Decoction (CLMD) is a classical 22 Traditional Chinese Medicine (TCM) formula from the Shanghan Lun comprising Bupleureum 23 chinense DC., Os Draconis, Concha Ostreae, and the other herbs.. Traditionally used to 24 harmonize Shaoyang, calm Shen (spirit), and treat emotional disturbances and insomnia related 25 to liver qi stagnation.. 26 Aim of the study: To evaluate CLMD’s therapeutic efficacy in insomnia-depression 27 comorbidity and elucidate molecular mechanisms through bioinformatics and experimental 28 validation.

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Leveraging single-cell transcriptomic data in the Human Protein Atlas (Methods and Extended Data Fig. 1), we linked 60 cell types to their corresponding plasma proteins. ..

Article Title:
Article Snippet: .. To test this hypothesis, we calculated median expression levels of genes up- or down-regulated by HSAN and/or 1-deoxysphingosines in different cell types of the human heart using single cell data from the Human Protein Atlas Project ( Uhlen et al., 2015 ). ..

RNA Sequencing:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Identification of cell type-enriched plasma proteins The Human Protein Atlas single-cell RNA-seq database (Human Protein Atlas version 24.1 www.proteinatlas.org/humanproteome) was used to map the putative cell type-specific plasma proteome. ..

Article Title: ALDH3A2-mediated fatty acid synthesis induces ferroptosis and AML drug resistance
Article Snippet: .. Analysis of RNA sequencing (RNA-seq) results for 88 leukemia cell lines in the Human Protein Atlas website (HPA) database showed that the top 25% of cell lines with the highest ALDH3A2 expression included fifteen AML cell lines, 4 chronic myeloid leukemia (CML) cell lines, 2 pediatric acute B-lymphoblastic leukemia cell lines, and one T-lymphoblastic leukemia cell line. ..

Expressing:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 2 | Enrichment profile examples of cell type-specific proteins. (a) Fold change of enriched proteins for pancreatic endocrine cells based on the Human Protein Atlas single-cell transcriptomic dataset (version 24.1): blue bars represent fold change compared to average expression across all other cell types; red bars show fold change relative to the second-highest expressing cell type. ..

Article Title: ALDH3A2-mediated fatty acid synthesis induces ferroptosis and AML drug resistance
Article Snippet: .. Analysis of RNA sequencing (RNA-seq) results for 88 leukemia cell lines in the Human Protein Atlas website (HPA) database showed that the top 25% of cell lines with the highest ALDH3A2 expression included fifteen AML cell lines, 4 chronic myeloid leukemia (CML) cell lines, 2 pediatric acute B-lymphoblastic leukemia cell lines, and one T-lymphoblastic leukemia cell line. ..

Article Title: Neuroprotective effects of Chaihu-Longgu-Muli Decoction in an insomnia-depression comorbidity model via Galectin-3-dependent JAK2/STAT3 inhibition.
Article Snippet: 21 Ethnopharmacological relevance: Chaihu-Longgu-Muli Decoction (CLMD) is a classical 22 Traditional Chinese Medicine (TCM) formula from the Shanghan Lun comprising Bupleureum 23 chinense DC., Os Draconis, Concha Ostreae, and the other herbs.. Traditionally used to 24 harmonize Shaoyang, calm Shen (spirit), and treat emotional disturbances and insomnia related 25 to liver qi stagnation.. 26 Aim of the study: To evaluate CLMD’s therapeutic efficacy in insomnia-depression 27 comorbidity and elucidate molecular mechanisms through bioinformatics and experimental 28 validation.

Article Title:
Article Snippet: .. To test this hypothesis, we calculated median expression levels of genes up- or down-regulated by HSAN and/or 1-deoxysphingosines in different cell types of the human heart using single cell data from the Human Protein Atlas Project ( Uhlen et al., 2015 ). ..

Gene Expression:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 1 | Identification of cell type-specific plasma proteins. (a) Z-scored gene expression of cell type-enriched plasma protein encoding genes in the Human Protein Atlas (HPA, version 24.1) single-cell transcriptomics dataset, labeled by cell type and grouped according to HPA cell type family categorizations. (b) Coverage of cell type-specific proteins across the 7,289 proteins measured by the 7k SomaScan platform. (c) Coverage of cell typespecific proteins across the 2,923 proteins measured by the 3k Olink platform. ..

Transcriptomics:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 1 | Identification of cell type-specific plasma proteins. (a) Z-scored gene expression of cell type-enriched plasma protein encoding genes in the Human Protein Atlas (HPA, version 24.1) single-cell transcriptomics dataset, labeled by cell type and grouped according to HPA cell type family categorizations. (b) Coverage of cell type-specific proteins across the 7,289 proteins measured by the 7k SomaScan platform. (c) Coverage of cell typespecific proteins across the 2,923 proteins measured by the 3k Olink platform. ..

Labeling:

Article Title: Plasma proteomic signatures of cellular aging predict human disease.
Article Snippet: .. Nature Medicine Article https://doi.org/10.1038/s41591-026-04446-y Extended Data Fig. 1 | Identification of cell type-specific plasma proteins. (a) Z-scored gene expression of cell type-enriched plasma protein encoding genes in the Human Protein Atlas (HPA, version 24.1) single-cell transcriptomics dataset, labeled by cell type and grouped according to HPA cell type family categorizations. (b) Coverage of cell type-specific proteins across the 7,289 proteins measured by the 7k SomaScan platform. (c) Coverage of cell typespecific proteins across the 2,923 proteins measured by the 3k Olink platform. ..



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a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) Transcriptomic data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.

Journal: bioRxiv

Article Title: Elevated temperature drives the biosynthesis of novel acylated glucosinolates in Arabidopsis thaliana seeds

doi: 10.64898/2026.06.03.729804

Figure Lengend Snippet: a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) Transcriptomic data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.

Article Snippet: Untargeted metabolomic raw data (.mzXML) for both negative and positive ESI modes, and metadata have been deposited at the MassiVE data repository portal with the following identifiers: The transcriptomic RNA-Seq raw data (FASTQ) have been deposited at the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly Sequence Database (TSA) with BioProject identification PRJNA1344327.

Techniques: Control, Metabolomic