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10X Genomics visium transcriptomic data
Visium Transcriptomic Data, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptomic+data/expression+gene+slides+spatial+visium/pm42160485-203-5-27
Average 86 stars, based on 1 article reviews
visium transcriptomic data - by Bioz Stars, 2026-11
86/100 stars

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Gene Expression:

Article Title: Mapping neuro-vascular unit communications reveals distinct angiogenic programs across developing mouse brain regions.
Article Snippet: .. Reactions were carried out with the Visium Spatial Gene Expression (GEX) and Tissue Optimization (TO) Slide & Reagent Kits according to the manufacturer’s protocol with recommended reagents (10X Genomics, 1000193 and 1000187). ..

Article Title: A glycan-based adjuvant expands the breadth and duration of protection of mRNA-based vaccines.
Article Snippet: DLS (ZetaPlus Zeta Potential Analyzer; Brookhaven Instruments) was performed to determine the stability of each active pharmaceutical ingredient in the FDC solution. .. 5′ gene expression (GEX) libraries, single-cell V(D)J libraries (10x Genomics, 1000255) and cell surface protein libraries were prepared according to the manufacturer’s protocols. .. Library quality was evaluated using an Agilent 2200 TapeStation, and final libraries were quantified by qPCR using the KAPA Library Quantification Kit for Illumina platforms.

Article Title: WNT signaling in human pluripotent stem cells promotes HDAC2-dependent epigenetic programs and development of retinoic acid-responsive mesoderm.
Article Snippet: 10,000 nuclei per sample were processed and isolated using the Nuclei EZ Prep kit (Sigma-Aldrich) according to the manufacturer’s protocol. .. Libraries for both ATAC-seq and RNA-seq were prepared using the Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle (10x Genomics, PN-1000283). .. Cells were first stained for aldehyde dehydrogenase expression using the ALDEFLUOR Kit (StemCell Technologies, Cat# 01700) according to the manufacturer’s protocol.

Single Cell:

Article Title: A glycan-based adjuvant expands the breadth and duration of protection of mRNA-based vaccines.
Article Snippet: DLS (ZetaPlus Zeta Potential Analyzer; Brookhaven Instruments) was performed to determine the stability of each active pharmaceutical ingredient in the FDC solution. .. 5′ gene expression (GEX) libraries, single-cell V(D)J libraries (10x Genomics, 1000255) and cell surface protein libraries were prepared according to the manufacturer’s protocols. .. Library quality was evaluated using an Agilent 2200 TapeStation, and final libraries were quantified by qPCR using the KAPA Library Quantification Kit for Illumina platforms.

Article Title: Multilayer network approaches to omics data integration in digital twins for cancer research
Article Snippet: .. This process requires the non-trivial development of new methods that capture salient information from either estimation of cell type proportions from bulk RNA-seq , or from single-cell spatial (Visium/Xenium) ( ) and non-spatial datasets (10x Genomics scRNA-seq/scATAC-seq) ( ). ..

Article Title: WNT signaling in human pluripotent stem cells promotes HDAC2-dependent epigenetic programs and development of retinoic acid-responsive mesoderm.
Article Snippet: 10,000 nuclei per sample were processed and isolated using the Nuclei EZ Prep kit (Sigma-Aldrich) according to the manufacturer’s protocol. .. Libraries for both ATAC-seq and RNA-seq were prepared using the Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle (10x Genomics, PN-1000283). .. Cells were first stained for aldehyde dehydrogenase expression using the ALDEFLUOR Kit (StemCell Technologies, Cat# 01700) according to the manufacturer’s protocol.

RNA Sequencing:

Article Title: Multilayer network approaches to omics data integration in digital twins for cancer research
Article Snippet: .. This process requires the non-trivial development of new methods that capture salient information from either estimation of cell type proportions from bulk RNA-seq , or from single-cell spatial (Visium/Xenium) ( ) and non-spatial datasets (10x Genomics scRNA-seq/scATAC-seq) ( ). ..

Article Title: WNT signaling in human pluripotent stem cells promotes HDAC2-dependent epigenetic programs and development of retinoic acid-responsive mesoderm.
Article Snippet: 10,000 nuclei per sample were processed and isolated using the Nuclei EZ Prep kit (Sigma-Aldrich) according to the manufacturer’s protocol. .. Libraries for both ATAC-seq and RNA-seq were prepared using the Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle (10x Genomics, PN-1000283). .. Cells were first stained for aldehyde dehydrogenase expression using the ALDEFLUOR Kit (StemCell Technologies, Cat# 01700) according to the manufacturer’s protocol.

other:

Article Title: Melanoma cell states shape spatial tumor-immune ecosystems to dictate the efficacy of anti-PD1 immunotherapy.
Article Snippet: Spatial transcriptomic data were generated by the CRCL (Cancer Research Center Of Lyon) Cancer Genomics Platform using Visium CytAssist Spatial gene expression for FFPE, Human Transcriptome, kit (10X Genomics), according to the manufacturer’s guidelines.



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a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) <t>Transcriptomic</t> data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.
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Image Search Results


a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) Transcriptomic data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.

Journal: bioRxiv

Article Title: Elevated temperature drives the biosynthesis of novel acylated glucosinolates in Arabidopsis thaliana seeds

doi: 10.64898/2026.06.03.729804

Figure Lengend Snippet: a) Log 2 ([elevated temperature/control] average total accumulation) of metabolic categories (n≥3) at six different seed developmental stages. b) Untargeted metabolomic data statistical analysis. c) Differentially accumulated metabolic features during seed development. d) Number of major metabolic categories (Flavonoids, Cinnamic acids and derivatives, and Glucosinolates) induced by elevated temperature at each seed developmental stage. e) Transcriptomic data statistical analysis. f) Differentially expressed genes during seed development. g) Percentages of genes coding for enzymes putatively involved in specialized metabolite modifications (Acyltransferases, Glycosyltransferases, Hydroxylases and Methyltransferases) induced, and repressed, at each seed developmental stage by elevated temperature.

Article Snippet: Untargeted metabolomic raw data (.mzXML) for both negative and positive ESI modes, and metadata have been deposited at the MassiVE data repository portal with the following identifiers: The transcriptomic RNA-Seq raw data (FASTQ) have been deposited at the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly Sequence Database (TSA) with BioProject identification PRJNA1344327.

Techniques: Control, Metabolomic