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Timelogic tera-tblastn algorithm
Tera Tblastn Algorithm, supplied by Timelogic, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tblastx+algorithm/decypher+tera+blastp+algorithm/pmc04561710-292-1-5
Average 90 stars, based on 1 article reviews
tera-tblastn algorithm - by Bioz Stars, 2026-11
90/100 stars

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Article Title: Diffusible gas transmitter signaling in the copepod crustacean Calanus finmarchicus : identification of the biosynthetic enzymes of nitric oxide (NO), carbon monoxide (CO) and hydrogen sulfide (H 2 S) using a de novo assembled transcriptome
Article Snippet: Searches of the transcriptome assembly produced by Trinity were conducted using the DeCypher Tera-BLASTP algorithm on the Mount Desert Island Biological Laboratory’s TimeLogic DeCypher server (MDIBL, Salisbury Cove, ME, USA; http://decypher.mdibl.org/decypher/algo-tera-blast/tera-tblastn_an.shtml ) as described previously ( Christie et al., 2013a , b , 2014 ).

Article Title: Diplospory gene
Article Snippet: Tera-BLASTP search Protein query (DeCypher, TimeLogic TM Standard settings).

Article Title: Representing and querying disease networks using graph databases
Article Snippet: Sequence similarity was determined by running all versus all Tera-BlastP TM for the UniProt Human reference proteome on the Timelogic DeCypher system.

Article Title: Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Article Snippet: In brief, we collated protein sequences from Artha (TAIR10 (50)), Potri (V3.0 (51)) and the two aspen species presented here and performed an all-against-all BLASTP sequence similarity search (Decypher TERA-BLASTP, e-value 1E-5, max hits 500 run on a TimeLogic Decypher machine, Active Motif Inc., Carlsbad, CA).

Article Title: Roles of Thermophiles and Fungi in Bitumen Degradation in Mostly Cold Oil Sands Outcrops
Article Snippet: The Tera-Tblastn algorithm on the TimeLogic Decypher system was used to screen fungal cytochrome P450 (CYP), lignin peroxidase, and manganese peroxidase gene reference sequences obtained from the Fungal Cytochrome P450 Database ( 36 ) and the fungal peroxidase database ( 37 ) against the quality-controlled metagenome reads.

Article Title: The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Article Snippet: Following an ‘all-vresus-all’ TimeLogic Decypher Tera-BLASTP (Active Motif Inc.; e-value threshold 1 × e−3, max hits 500) comparison, OrthoMCL (v. 2.0; mcl inflation factor 3.0)83 was used to delineate gene families.

Article Title: Insights Into the Mechanisms Implicated in Pinus pinaster Resistance to Pinewood Nematode
Article Snippet: The resulting contigs were compared with the previously available P. pinaster transcriptome and PWN genome (Kikuchi et al., ) using BLASTn (DeCypher Tera-BLASTn, TimeLogic, California, USA) and highly similar sequences ( e ≤ 10 −5 ) were filtered out.

Article Title: Massive Protein Import into the Early-Evolutionary-Stage Photosynthetic Organelle of the Amoeba Paulinella chromatophora.
Article Snippet: To perform GO annotation, all P. chromatophora proteins were blasted against the NCBI nr database (Effective 08.03.2016) using tera-blastp (http://www.timelogic.com) with an e-value cutoff of 0.1.



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