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real time qpcr  (Bio-Rad)


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    Structured Review

    Bio-Rad real time qpcr
    a , Volcano plots as in Fig. , highlighting pluripotency-associated factors that are enriched (red) or not significantly changed (black) on WT (left plot) or Suv39h dn (right plot) ESC mitotic chromosomes. b , Esrrb immunolabeling (red) of WT and Suv39h dn flow-sorted chromosomes 19 (left panel) and X (right panel), where DAPI counterstain is shown in light gray. Scale bar, 5 μm. Esrrb mean intensities were measured across individual chromosomes; the mean ± s.d. is shown ( n = minimum 50 chromosomes analyzed over 3 independent experiments). P values of statistically significant changes, measured by unpaired, two-tailed Student’s t -tests, are indicated. c , Esrrb <t>ChIP–qPCR</t> analysis in WT versus Suv39h dn mitotic and asynchronous ESCs. Enrichment (immunoprecipitated as a percentage of input (% IP)) was measured at Esrrb bookmarked sites ( Capn2 , Esrrb , Jam2-s1 , Jam2-s2 , Tbx3 and Tet2 ), Esrrb lost sites (bound only in interphase ; Mgat3 and Twistnb ) or control sites that do not bind Esrrb ( Esrrb-3 ′ and Actb ). The mean + s.d. results are shown. For interphase cells n = 3 biological replicates, for mitotic cells n = 4 biological replicates (except Capn2 , Esrrb , Rex1 and Jam2-s1 , where n = 5). d , Live-cell imaging of Esrrb–tdTomato mouse ESCs pretreated with DMSO (upper panel) or 100 nM of chaetocin (lower panel) cultured with SiR-DNA (red). Arrows show Esrrb localization to mitotic chromatin. Scale bar, 5 μm. Esrrb–tdTomato mean intensities on mitotic DNA (gated based on SiR-DNA signal) and in interphase nuclei were quantified for each condition; the mean ± s.d. is shown. For mitotic chromosomes: n = 25 (DMSO) or n = 35 (chaetocin) cells analyzed; for interphase nuclei: n = 46 cells analyzed for both DMSO and chaetocin treatments, representing 3 independent experiments. b – d , P values of statistically significant changes, measured by unpaired, two-tailed Student’s t -tests, are indicated. and precise n numbers are provided.
    Real Time Qpcr, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 98/100, based on 13700 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/system+on+chip+field+programmable+gate+array+processor/CFX+Manager+Software/pmc10113154-336-0-2
    Average 98 stars, based on 13700 article reviews
    real time qpcr - by Bioz Stars, 2026-10
    98/100 stars

    Images

    1) Product Images from "Loss of H3K9 trimethylation alters chromosome compaction and transcription factor retention during mitosis"

    Article Title: Loss of H3K9 trimethylation alters chromosome compaction and transcription factor retention during mitosis

    Journal: Nature Structural & Molecular Biology

    doi: 10.1038/s41594-023-00943-7

    a , Volcano plots as in Fig. , highlighting pluripotency-associated factors that are enriched (red) or not significantly changed (black) on WT (left plot) or Suv39h dn (right plot) ESC mitotic chromosomes. b , Esrrb immunolabeling (red) of WT and Suv39h dn flow-sorted chromosomes 19 (left panel) and X (right panel), where DAPI counterstain is shown in light gray. Scale bar, 5 μm. Esrrb mean intensities were measured across individual chromosomes; the mean ± s.d. is shown ( n = minimum 50 chromosomes analyzed over 3 independent experiments). P values of statistically significant changes, measured by unpaired, two-tailed Student’s t -tests, are indicated. c , Esrrb ChIP–qPCR analysis in WT versus Suv39h dn mitotic and asynchronous ESCs. Enrichment (immunoprecipitated as a percentage of input (% IP)) was measured at Esrrb bookmarked sites ( Capn2 , Esrrb , Jam2-s1 , Jam2-s2 , Tbx3 and Tet2 ), Esrrb lost sites (bound only in interphase ; Mgat3 and Twistnb ) or control sites that do not bind Esrrb ( Esrrb-3 ′ and Actb ). The mean + s.d. results are shown. For interphase cells n = 3 biological replicates, for mitotic cells n = 4 biological replicates (except Capn2 , Esrrb , Rex1 and Jam2-s1 , where n = 5). d , Live-cell imaging of Esrrb–tdTomato mouse ESCs pretreated with DMSO (upper panel) or 100 nM of chaetocin (lower panel) cultured with SiR-DNA (red). Arrows show Esrrb localization to mitotic chromatin. Scale bar, 5 μm. Esrrb–tdTomato mean intensities on mitotic DNA (gated based on SiR-DNA signal) and in interphase nuclei were quantified for each condition; the mean ± s.d. is shown. For mitotic chromosomes: n = 25 (DMSO) or n = 35 (chaetocin) cells analyzed; for interphase nuclei: n = 46 cells analyzed for both DMSO and chaetocin treatments, representing 3 independent experiments. b – d , P values of statistically significant changes, measured by unpaired, two-tailed Student’s t -tests, are indicated. and precise n numbers are provided.
    Figure Legend Snippet: a , Volcano plots as in Fig. , highlighting pluripotency-associated factors that are enriched (red) or not significantly changed (black) on WT (left plot) or Suv39h dn (right plot) ESC mitotic chromosomes. b , Esrrb immunolabeling (red) of WT and Suv39h dn flow-sorted chromosomes 19 (left panel) and X (right panel), where DAPI counterstain is shown in light gray. Scale bar, 5 μm. Esrrb mean intensities were measured across individual chromosomes; the mean ± s.d. is shown ( n = minimum 50 chromosomes analyzed over 3 independent experiments). P values of statistically significant changes, measured by unpaired, two-tailed Student’s t -tests, are indicated. c , Esrrb ChIP–qPCR analysis in WT versus Suv39h dn mitotic and asynchronous ESCs. Enrichment (immunoprecipitated as a percentage of input (% IP)) was measured at Esrrb bookmarked sites ( Capn2 , Esrrb , Jam2-s1 , Jam2-s2 , Tbx3 and Tet2 ), Esrrb lost sites (bound only in interphase ; Mgat3 and Twistnb ) or control sites that do not bind Esrrb ( Esrrb-3 ′ and Actb ). The mean + s.d. results are shown. For interphase cells n = 3 biological replicates, for mitotic cells n = 4 biological replicates (except Capn2 , Esrrb , Rex1 and Jam2-s1 , where n = 5). d , Live-cell imaging of Esrrb–tdTomato mouse ESCs pretreated with DMSO (upper panel) or 100 nM of chaetocin (lower panel) cultured with SiR-DNA (red). Arrows show Esrrb localization to mitotic chromatin. Scale bar, 5 μm. Esrrb–tdTomato mean intensities on mitotic DNA (gated based on SiR-DNA signal) and in interphase nuclei were quantified for each condition; the mean ± s.d. is shown. For mitotic chromosomes: n = 25 (DMSO) or n = 35 (chaetocin) cells analyzed; for interphase nuclei: n = 46 cells analyzed for both DMSO and chaetocin treatments, representing 3 independent experiments. b – d , P values of statistically significant changes, measured by unpaired, two-tailed Student’s t -tests, are indicated. and precise n numbers are provided.

    Techniques Used: Immunolabeling, Two Tailed Test, ChIP-qPCR, Immunoprecipitation, Control, Live Cell Imaging, Cell Culture

    Related Articles

    Reverse Transcription:

    Article Title: The PAXT connection is a modifier of rare codon-enriched protein expression
    Article Snippet: .. Thirty to 500 ng of RNA was reverse transcribed and subjected to RT-qPCR using the Gotaq 2-step RT-qPCR system (Promega) and analyzed on a CFX 384 real-time system C1000 touch thermal cycler using CFX Manager Software Version 3.1 (Bio-Rad). ..

    Quantitative RT-PCR:

    Article Title: The PAXT connection is a modifier of rare codon-enriched protein expression
    Article Snippet: .. Thirty to 500 ng of RNA was reverse transcribed and subjected to RT-qPCR using the Gotaq 2-step RT-qPCR system (Promega) and analyzed on a CFX 384 real-time system C1000 touch thermal cycler using CFX Manager Software Version 3.1 (Bio-Rad). ..

    Article Title: Cell-type-specific mechanoadaptation to sustained hydrostatic pressure and flow in glioblastoma cells and astrocytes
    Article Snippet: .. Analysis of qRT-PCR results was conducted with Bio-Rad CFX Manager software, Article in Press Scientific Reports https://doi.org/10.1038/s41598-026-73650-0 and two-fold regulation was considered as a threshold. ..

    Software:

    Article Title: The PAXT connection is a modifier of rare codon-enriched protein expression
    Article Snippet: .. Thirty to 500 ng of RNA was reverse transcribed and subjected to RT-qPCR using the Gotaq 2-step RT-qPCR system (Promega) and analyzed on a CFX 384 real-time system C1000 touch thermal cycler using CFX Manager Software Version 3.1 (Bio-Rad). ..

    Article Title: VWA2 fuels colon cancer growth and immune evasion through Wnt/β-catenin signaling.
    Article Snippet: .. The experi- mental data were collected and analyzed by BIO-RAD CFX Manager and GraphPad Prism software. .. When the cell density increased to 80%, after washing with PBS, cells were added to cell lysis solution (Thermo Fisher, USA) for 30 min.

    Article Title: Identification of new fucosyltransferase-8 inhibitors: An integrated biochemical, biophysical, and computational approach.
    Article Snippet: To process the NMR data, 4.3.1 (Bruker, Biospin GmbH, Germany) was used. .. For the thermal shift assay, the fluorescence of the Syprorange dye as a function of temperature was recorded using the HEX (Ex/ Em: 538/555 nm) channel, and the data were analyzed using CFX 96 ManagerTM software (Bio-Rad Laboratories, USA). ..

    Article Title: Mycoplasma gallinarum infection associated with apparent Mycoplasma meleagridis seropositivity in breeder turkey flocks.
    Article Snippet: Real-time RT-PCR reactions were performed according to the manufacturer’s protocol using a 7500 CFX96 Real Time System thermocycler (Bio-Rad, Hercules, CA, USA). .. Fluorescence results were obtained using the dedicated CFX Manager Dx software (Bio-Rad). ..

    Article Title: The transcriptional regulator ArcR represses virulence and γ-hemolysin expression in Staphylococcus aureus USA300 LAC.
    Article Snippet: .. Relative expression levels were calculated using the ΔΔCt method, and data were analyzed with CFX Manager 3.1 software (BioRad). ..

    Article Title: Omaveloxolone functions as a molecular crowbar-like degrader of STING to alleviate aging-related inflammation
    Article Snippet: .. The Tm values were calculated by the CFX Manager 3.1 software (Bio-Rad). .. ITC experiment was performed at 25 °C using a MicroCal PEAQ-ITC instrument (Malvern).

    Article Title: Cell-type-specific mechanoadaptation to sustained hydrostatic pressure and flow in glioblastoma cells and astrocytes
    Article Snippet: .. Analysis of qRT-PCR results was conducted with Bio-Rad CFX Manager software, Article in Press Scientific Reports https://doi.org/10.1038/s41598-026-73650-0 and two-fold regulation was considered as a threshold. ..

    Thermal Shift Assay:

    Article Title: Identification of new fucosyltransferase-8 inhibitors: An integrated biochemical, biophysical, and computational approach.
    Article Snippet: To process the NMR data, 4.3.1 (Bruker, Biospin GmbH, Germany) was used. .. For the thermal shift assay, the fluorescence of the Syprorange dye as a function of temperature was recorded using the HEX (Ex/ Em: 538/555 nm) channel, and the data were analyzed using CFX 96 ManagerTM software (Bio-Rad Laboratories, USA). ..

    Fluorescence:

    Article Title: Identification of new fucosyltransferase-8 inhibitors: An integrated biochemical, biophysical, and computational approach.
    Article Snippet: To process the NMR data, 4.3.1 (Bruker, Biospin GmbH, Germany) was used. .. For the thermal shift assay, the fluorescence of the Syprorange dye as a function of temperature was recorded using the HEX (Ex/ Em: 538/555 nm) channel, and the data were analyzed using CFX 96 ManagerTM software (Bio-Rad Laboratories, USA). ..

    Article Title: Mycoplasma gallinarum infection associated with apparent Mycoplasma meleagridis seropositivity in breeder turkey flocks.
    Article Snippet: Real-time RT-PCR reactions were performed according to the manufacturer’s protocol using a 7500 CFX96 Real Time System thermocycler (Bio-Rad, Hercules, CA, USA). .. Fluorescence results were obtained using the dedicated CFX Manager Dx software (Bio-Rad). ..

    Real-time Polymerase Chain Reaction:

    Article Title: Legionella community diversity and dynamics in activated sludge systems of industrial wastewater treatment plants: Are they transient visitors or residents?
    Article Snippet: The environmental source of Legionella infections, which can cause severe pneumonia, often remains unidentified.. Increasing global incidence highlight the need to explore additional infection sources.. Wastewater treatment plants (WWTPs) have been linked to Legionella outbreaks.

    Activated Clotting Time Assay:

    Article Title: Legionella community diversity and dynamics in activated sludge systems of industrial wastewater treatment plants: Are they transient visitors or residents?
    Article Snippet: The environmental source of Legionella infections, which can cause severe pneumonia, often remains unidentified.. Increasing global incidence highlight the need to explore additional infection sources.. Wastewater treatment plants (WWTPs) have been linked to Legionella outbreaks.

    CTG Assay:

    Article Title: Legionella community diversity and dynamics in activated sludge systems of industrial wastewater treatment plants: Are they transient visitors or residents?
    Article Snippet: The environmental source of Legionella infections, which can cause severe pneumonia, often remains unidentified.. Increasing global incidence highlight the need to explore additional infection sources.. Wastewater treatment plants (WWTPs) have been linked to Legionella outbreaks.

    Cellular Antioxidant Activity Assay:

    Article Title: Legionella community diversity and dynamics in activated sludge systems of industrial wastewater treatment plants: Are they transient visitors or residents?
    Article Snippet: The environmental source of Legionella infections, which can cause severe pneumonia, often remains unidentified.. Increasing global incidence highlight the need to explore additional infection sources.. Wastewater treatment plants (WWTPs) have been linked to Legionella outbreaks.

    Expressing:

    Article Title: The transcriptional regulator ArcR represses virulence and γ-hemolysin expression in Staphylococcus aureus USA300 LAC.
    Article Snippet: .. Relative expression levels were calculated using the ΔΔCt method, and data were analyzed with CFX Manager 3.1 software (BioRad). ..

    Analysis:

    Article Title: Cell-type-specific mechanoadaptation to sustained hydrostatic pressure and flow in glioblastoma cells and astrocytes
    Article Snippet: .. Analysis of qRT-PCR results was conducted with Bio-Rad CFX Manager software, Article in Press Scientific Reports https://doi.org/10.1038/s41598-026-73650-0 and two-fold regulation was considered as a threshold. ..



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