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177 bp  (New England Biolabs)


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    Structured Review

    New England Biolabs 177 bp
    177 Bp, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 2814 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/statistical+program+stata+version+12/EcoRV/pm29959925-191-8-25
    Average 98 stars, based on 2814 article reviews
    177 bp - by Bioz Stars, 2026-11
    98/100 stars

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    Related Articles

    Recombinant:

    Article Title: Deciphering the functional roles of glutaredoxin 1 in chub mackerel (Scomber japonicus): implications for antioxidant defense and immune responses
    Article Snippet: .. Recombinant expression vector construction The Sjgrx1 coding sequence was amplified using PCR using primers with EcoRI and EcoRV restriction sites (Supplementary Table 1) and sub-cloned into the pMAL-c5X plasmid vector (New England BioLabs, Ipswich, MA, USA) for recombinant protein expression. .. Additionally, Sjgrx1 coding sequence with BamHI and EcoRV sites was sub-cloned into the pcDNA3.1(+) expression vector (Invitrogen, Waltham, MA, USA) for overexpression in cellular assays.

    Expressing:

    Article Title: Deciphering the functional roles of glutaredoxin 1 in chub mackerel (Scomber japonicus): implications for antioxidant defense and immune responses
    Article Snippet: .. Recombinant expression vector construction The Sjgrx1 coding sequence was amplified using PCR using primers with EcoRI and EcoRV restriction sites (Supplementary Table 1) and sub-cloned into the pMAL-c5X plasmid vector (New England BioLabs, Ipswich, MA, USA) for recombinant protein expression. .. Additionally, Sjgrx1 coding sequence with BamHI and EcoRV sites was sub-cloned into the pcDNA3.1(+) expression vector (Invitrogen, Waltham, MA, USA) for overexpression in cellular assays.

    Plasmid Preparation:

    Article Title: Deciphering the functional roles of glutaredoxin 1 in chub mackerel (Scomber japonicus): implications for antioxidant defense and immune responses
    Article Snippet: .. Recombinant expression vector construction The Sjgrx1 coding sequence was amplified using PCR using primers with EcoRI and EcoRV restriction sites (Supplementary Table 1) and sub-cloned into the pMAL-c5X plasmid vector (New England BioLabs, Ipswich, MA, USA) for recombinant protein expression. .. Additionally, Sjgrx1 coding sequence with BamHI and EcoRV sites was sub-cloned into the pcDNA3.1(+) expression vector (Invitrogen, Waltham, MA, USA) for overexpression in cellular assays.

    Article Title: A two-tier architecture governs monomer incorporation and granule morphology in polyhydroxyalkanoate synthases: implications for bioplastic production
    Article Snippet: .. The pBBR1MCS2 vector was linearized using FastDigest EcoRV and XbaI (New England Biolabs Inc., USA). .. A DNA fragment containing the phaC1 promoter region was amplified from the genomic DNA of C. necator H16 using KOD One PCR Master Mix Blue (Toyobo Co. Ltd., Japan).

    Article Title: Stable expression of Interleukin-18 in a live-attenuated PRRSV backbone confers safe and potent immune protection in pigs.
    Article Snippet: Porcine reproductive and respiratory syndrome virus (PRRSV) is a major swine pathogen responsible for substantial economic losses, and current live-attenuated vaccines provide suboptimal cross-protection.. Interleukin18 (IL-18), a multifunctional pro-inflammatory cytokine, has potent immunostimulatory effects that can enhance antiviral defense.. In this study, we employed a reverse genetics system to insert the swine IL-18 gene between open reading frame 1b (ORF1b) and open reading frame 2a (ORF2a) of the full-length cDNA clone of the attenuated PRRSV strain pHuN4-F112, generating the recombinant virus rPRRSV-IL18.

    Article Title: In vivo DNA damage protection during cell migration across confining embryonic tissue environments.
    Article Snippet: The cmlc2EGFP expression cassette was amplified from pDestTol2CG2 (refs. 101,102) using the primers 5′-CATCATGGTACCAAAGCTTAAATCAGTTGT-3′ and 5′-ATGATGGG TACCTTACTTGTACAGCTCGTC-3′, and inserted into the Kpn I site of 14xUAS-BGI-nucEmGFP-POUT using T4 DNA ligase (Promega). .. To generate the UAS-cGASa-EGFP plasmid, Danio Rerio cGASa was amplified by PCR from pEGFPN1-cGASa-EGFP (ref. 103) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATGAGCAGCCACAG GAGACCAG-3′ and 5′- GGTGGCTGAGACTTAATTACTAGTTTACTTGTA CAGCTCGTCCATGCC-3′, then inserted into a pTol1-UAS-nls-emGFP plasmid backbone linearized with EcoRV-SpeI to remove the nls-emGFP insert using the NEBuilder HiFi DNA Assembly Cloning Kit (New England Biolabs, 10173994). .. To generate the UAS-Halo-LaminB2 plasmid, Halo was amplified by PCR from LZ10 PBREBAC-H2BHalo (Addgene 91564) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATG GAAATCGGTACTGGCTTT-3′ and 5′-TCGGGGTTGCGGTCGCGATAT CACCGGAAATCTCCAGAGT-3′.

    Article Title: Disruption of the LRRK2 substrate RAB12 facilitates neurotransmission and causes hyperactivity in mice.
    Article Snippet: Constructs were assembled using the NEBuilder® HiFi DNA Assembly Kit (NEB, #E2621L) to generate AAV-hSyn-mCherry-GSTIRES-tTA and AAV-hSyn-mCherry-Rab12-IRES-tTA. .. To generate AAV-TRE-vGLUT1pHluorin, DNA fragments encoding fDIO-GFP-IRES-tTA were excised from the AAV-TREfDIO-GFP-IRES-tTA plasmid (Addgene, #118026) using EcoRI and EcoRV restriction enzymes. vGLUT1-pHluorin DNA fragments were amplified and inserted into the linearized plasmid using the NEBuilder® HiFi DNA Assembly Kit. ..

    Article Title: Enzymatically controlled release of proteins and peptides: A promising, alternative secretion approach
    Article Snippet: .. Inserts were isolated by restriction from the gene synthesis vector with Eco RI/ Eco RV enzymes (NEB, New England Biolabs GmbH, Frankfurt, Germany) and ligated into Eco RI/ Eco RV digested ptANCHOR-CD63-V5-His-mCherry or ptANCHOR-CD82-V5-His-mCherry vector using T4 ligase (NEB). .. Ligation was transformed into DH5α E. coli chemocompetent cells (NEB).

    Sequencing:

    Article Title: Deciphering the functional roles of glutaredoxin 1 in chub mackerel (Scomber japonicus): implications for antioxidant defense and immune responses
    Article Snippet: .. Recombinant expression vector construction The Sjgrx1 coding sequence was amplified using PCR using primers with EcoRI and EcoRV restriction sites (Supplementary Table 1) and sub-cloned into the pMAL-c5X plasmid vector (New England BioLabs, Ipswich, MA, USA) for recombinant protein expression. .. Additionally, Sjgrx1 coding sequence with BamHI and EcoRV sites was sub-cloned into the pcDNA3.1(+) expression vector (Invitrogen, Waltham, MA, USA) for overexpression in cellular assays.

    Amplification:

    Article Title: Deciphering the functional roles of glutaredoxin 1 in chub mackerel (Scomber japonicus): implications for antioxidant defense and immune responses
    Article Snippet: .. Recombinant expression vector construction The Sjgrx1 coding sequence was amplified using PCR using primers with EcoRI and EcoRV restriction sites (Supplementary Table 1) and sub-cloned into the pMAL-c5X plasmid vector (New England BioLabs, Ipswich, MA, USA) for recombinant protein expression. .. Additionally, Sjgrx1 coding sequence with BamHI and EcoRV sites was sub-cloned into the pcDNA3.1(+) expression vector (Invitrogen, Waltham, MA, USA) for overexpression in cellular assays.

    Article Title: In vivo DNA damage protection during cell migration across confining embryonic tissue environments.
    Article Snippet: The cmlc2EGFP expression cassette was amplified from pDestTol2CG2 (refs. 101,102) using the primers 5′-CATCATGGTACCAAAGCTTAAATCAGTTGT-3′ and 5′-ATGATGGG TACCTTACTTGTACAGCTCGTC-3′, and inserted into the Kpn I site of 14xUAS-BGI-nucEmGFP-POUT using T4 DNA ligase (Promega). .. To generate the UAS-cGASa-EGFP plasmid, Danio Rerio cGASa was amplified by PCR from pEGFPN1-cGASa-EGFP (ref. 103) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATGAGCAGCCACAG GAGACCAG-3′ and 5′- GGTGGCTGAGACTTAATTACTAGTTTACTTGTA CAGCTCGTCCATGCC-3′, then inserted into a pTol1-UAS-nls-emGFP plasmid backbone linearized with EcoRV-SpeI to remove the nls-emGFP insert using the NEBuilder HiFi DNA Assembly Cloning Kit (New England Biolabs, 10173994). .. To generate the UAS-Halo-LaminB2 plasmid, Halo was amplified by PCR from LZ10 PBREBAC-H2BHalo (Addgene 91564) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATG GAAATCGGTACTGGCTTT-3′ and 5′-TCGGGGTTGCGGTCGCGATAT CACCGGAAATCTCCAGAGT-3′.

    Article Title: Disruption of the LRRK2 substrate RAB12 facilitates neurotransmission and causes hyperactivity in mice.
    Article Snippet: Constructs were assembled using the NEBuilder® HiFi DNA Assembly Kit (NEB, #E2621L) to generate AAV-hSyn-mCherry-GSTIRES-tTA and AAV-hSyn-mCherry-Rab12-IRES-tTA. .. To generate AAV-TRE-vGLUT1pHluorin, DNA fragments encoding fDIO-GFP-IRES-tTA were excised from the AAV-TREfDIO-GFP-IRES-tTA plasmid (Addgene, #118026) using EcoRI and EcoRV restriction enzymes. vGLUT1-pHluorin DNA fragments were amplified and inserted into the linearized plasmid using the NEBuilder® HiFi DNA Assembly Kit. ..

    Polymerase Chain Reaction:

    Article Title: Deciphering the functional roles of glutaredoxin 1 in chub mackerel (Scomber japonicus): implications for antioxidant defense and immune responses
    Article Snippet: .. Recombinant expression vector construction The Sjgrx1 coding sequence was amplified using PCR using primers with EcoRI and EcoRV restriction sites (Supplementary Table 1) and sub-cloned into the pMAL-c5X plasmid vector (New England BioLabs, Ipswich, MA, USA) for recombinant protein expression. .. Additionally, Sjgrx1 coding sequence with BamHI and EcoRV sites was sub-cloned into the pcDNA3.1(+) expression vector (Invitrogen, Waltham, MA, USA) for overexpression in cellular assays.

    Article Title: In vivo DNA damage protection during cell migration across confining embryonic tissue environments.
    Article Snippet: The cmlc2EGFP expression cassette was amplified from pDestTol2CG2 (refs. 101,102) using the primers 5′-CATCATGGTACCAAAGCTTAAATCAGTTGT-3′ and 5′-ATGATGGG TACCTTACTTGTACAGCTCGTC-3′, and inserted into the Kpn I site of 14xUAS-BGI-nucEmGFP-POUT using T4 DNA ligase (Promega). .. To generate the UAS-cGASa-EGFP plasmid, Danio Rerio cGASa was amplified by PCR from pEGFPN1-cGASa-EGFP (ref. 103) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATGAGCAGCCACAG GAGACCAG-3′ and 5′- GGTGGCTGAGACTTAATTACTAGTTTACTTGTA CAGCTCGTCCATGCC-3′, then inserted into a pTol1-UAS-nls-emGFP plasmid backbone linearized with EcoRV-SpeI to remove the nls-emGFP insert using the NEBuilder HiFi DNA Assembly Cloning Kit (New England Biolabs, 10173994). .. To generate the UAS-Halo-LaminB2 plasmid, Halo was amplified by PCR from LZ10 PBREBAC-H2BHalo (Addgene 91564) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATG GAAATCGGTACTGGCTTT-3′ and 5′-TCGGGGTTGCGGTCGCGATAT CACCGGAAATCTCCAGAGT-3′.

    Article Title: WEE1 opposes APC/C CDH1 activity to promote S phase entry.
    Article Snippet: .. All PCR products were run on 0.8% TBE agarose gels, and bands were gel extracted and assembled into EcoRV-digested pSKII(-) using Gibson assembly with a NEB HiFi Assembly kit, according to the manufacturer’s instructions for four-way assembly. ..

    Activity Assay:

    Article Title: The interplay between supercoiling and DNA modifying enzymes at the single-molecule level.
    Article Snippet: The reaction product was then purified using anti-flag magnetic beads (Sigma-Aldrich). .. Enzyme purity was confirmed by SDSPAGE and activity tests confirmed that the fluorescently labelled EcoRV was comparable in activity to commercial EcoRV (New England Biolabs) (see Supplementary Figure S4 and S8 online). .. The fluorescently labelled EcoRV was and then diluted in EcoRV storage buffer as outlined by New England Biolabs (10 mM Tris-HCl, 200 mM NaCl, 1 mM DTT, 0.1 mM EDTA, 200 μg/ml BSA, 50% Glycerol, pH 7.4 @ 25°C) and aliquoted and stored at - 20°C.

    Construct:

    Article Title: Stable expression of Interleukin-18 in a live-attenuated PRRSV backbone confers safe and potent immune protection in pigs.
    Article Snippet: Porcine reproductive and respiratory syndrome virus (PRRSV) is a major swine pathogen responsible for substantial economic losses, and current live-attenuated vaccines provide suboptimal cross-protection.. Interleukin18 (IL-18), a multifunctional pro-inflammatory cytokine, has potent immunostimulatory effects that can enhance antiviral defense.. In this study, we employed a reverse genetics system to insert the swine IL-18 gene between open reading frame 1b (ORF1b) and open reading frame 2a (ORF2a) of the full-length cDNA clone of the attenuated PRRSV strain pHuN4-F112, generating the recombinant virus rPRRSV-IL18.

    Molecular Cloning:

    Article Title: In vivo DNA damage protection during cell migration across confining embryonic tissue environments.
    Article Snippet: The cmlc2EGFP expression cassette was amplified from pDestTol2CG2 (refs. 101,102) using the primers 5′-CATCATGGTACCAAAGCTTAAATCAGTTGT-3′ and 5′-ATGATGGG TACCTTACTTGTACAGCTCGTC-3′, and inserted into the Kpn I site of 14xUAS-BGI-nucEmGFP-POUT using T4 DNA ligase (Promega). .. To generate the UAS-cGASa-EGFP plasmid, Danio Rerio cGASa was amplified by PCR from pEGFPN1-cGASa-EGFP (ref. 103) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATGAGCAGCCACAG GAGACCAG-3′ and 5′- GGTGGCTGAGACTTAATTACTAGTTTACTTGTA CAGCTCGTCCATGCC-3′, then inserted into a pTol1-UAS-nls-emGFP plasmid backbone linearized with EcoRV-SpeI to remove the nls-emGFP insert using the NEBuilder HiFi DNA Assembly Cloning Kit (New England Biolabs, 10173994). .. To generate the UAS-Halo-LaminB2 plasmid, Halo was amplified by PCR from LZ10 PBREBAC-H2BHalo (Addgene 91564) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATG GAAATCGGTACTGGCTTT-3′ and 5′-TCGGGGTTGCGGTCGCGATAT CACCGGAAATCTCCAGAGT-3′.

    Cloning:

    Article Title: In vivo DNA damage protection during cell migration across confining embryonic tissue environments.
    Article Snippet: The cmlc2EGFP expression cassette was amplified from pDestTol2CG2 (refs. 101,102) using the primers 5′-CATCATGGTACCAAAGCTTAAATCAGTTGT-3′ and 5′-ATGATGGG TACCTTACTTGTACAGCTCGTC-3′, and inserted into the Kpn I site of 14xUAS-BGI-nucEmGFP-POUT using T4 DNA ligase (Promega). .. To generate the UAS-cGASa-EGFP plasmid, Danio Rerio cGASa was amplified by PCR from pEGFPN1-cGASa-EGFP (ref. 103) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATGAGCAGCCACAG GAGACCAG-3′ and 5′- GGTGGCTGAGACTTAATTACTAGTTTACTTGTA CAGCTCGTCCATGCC-3′, then inserted into a pTol1-UAS-nls-emGFP plasmid backbone linearized with EcoRV-SpeI to remove the nls-emGFP insert using the NEBuilder HiFi DNA Assembly Cloning Kit (New England Biolabs, 10173994). .. To generate the UAS-Halo-LaminB2 plasmid, Halo was amplified by PCR from LZ10 PBREBAC-H2BHalo (Addgene 91564) using the primers 5′-CTGGGCAACGTGGAATTCGATATCATG GAAATCGGTACTGGCTTT-3′ and 5′-TCGGGGTTGCGGTCGCGATAT CACCGGAAATCTCCAGAGT-3′.

    Bioprocessing:

    Article Title: Disruption of the LRRK2 substrate RAB12 facilitates neurotransmission and causes hyperactivity in mice.
    Article Snippet: Constructs were assembled using the NEBuilder® HiFi DNA Assembly Kit (NEB, #E2621L) to generate AAV-hSyn-mCherry-GSTIRES-tTA and AAV-hSyn-mCherry-Rab12-IRES-tTA. .. To generate AAV-TRE-vGLUT1pHluorin, DNA fragments encoding fDIO-GFP-IRES-tTA were excised from the AAV-TREfDIO-GFP-IRES-tTA plasmid (Addgene, #118026) using EcoRI and EcoRV restriction enzymes. vGLUT1-pHluorin DNA fragments were amplified and inserted into the linearized plasmid using the NEBuilder® HiFi DNA Assembly Kit. ..

    Isolation:

    Article Title: Enzymatically controlled release of proteins and peptides: A promising, alternative secretion approach
    Article Snippet: .. Inserts were isolated by restriction from the gene synthesis vector with Eco RI/ Eco RV enzymes (NEB, New England Biolabs GmbH, Frankfurt, Germany) and ligated into Eco RI/ Eco RV digested ptANCHOR-CD63-V5-His-mCherry or ptANCHOR-CD82-V5-His-mCherry vector using T4 ligase (NEB). .. Ligation was transformed into DH5α E. coli chemocompetent cells (NEB).

    Gibson Assembly:

    Article Title: WEE1 opposes APC/C CDH1 activity to promote S phase entry.
    Article Snippet: .. All PCR products were run on 0.8% TBE agarose gels, and bands were gel extracted and assembled into EcoRV-digested pSKII(-) using Gibson assembly with a NEB HiFi Assembly kit, according to the manufacturer’s instructions for four-way assembly. ..



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