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MOgene Inc 1.0 st arrays
1.0 St Arrays, supplied by MOgene Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/st+array/1+0+st+arrays/pmc06495066-232-1-1
Average 90 stars, based on 1 article reviews
1.0 st arrays - by Bioz Stars, 2026-09
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Related Articles

Purification:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Gene Expression:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Saline:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Amplification:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Generated:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Double Knockout:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Luciferase:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Activity Assay:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Construct:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Binding Assay:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Transfection:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Control:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Sequencing:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Western Blot:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.

Chromatin Immunoprecipitation:

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells.
Article Snippet: To identify transcriptome changes during cIN maturation, we compared the transcriptome of purified cINs in the E13 mice cortex28 versus purified cINs in the P40 mice cortex.29 All MoGene 1.0 ST arrays28 were processed using the “oligo” BioConductor package47 and all mouse 430A2 arrays29 with the “affy” Bioconductor package.48 Both the E13 cortex and P40 interneurons’ array data were quality controlled with array Quality Metrics,49 normalized with multi-array average (RMA),50 filtered, subset to one probe per gene (using the probeset for each gene with the maximummean value for all samples) and further subset to common genes between two datasets using the insilicodb Bioconductor package.51 Due to difference in the probe intensity distributions of the two arrays in the studies, we compared gene expression via a rank-based method.

Article Title: Tumour ischaemia by interferon- γ resembles physiological blood vessel regression
Article Snippet: Fragmented cDNA (3.8 μg) was hybridized to MOGENE 2.0 ST arrays.

Article Title: Loss of KDM6A activates super-enhancers to induce gender-specific squamous-like pancreatic cancer and confers sensitivity to BET inhibitors
Article Snippet: Briefly, 100 ng of mRNA was used as input for the PrimeView 3.0 (3’ IVT human array) and MoGene 2.0 ST (mouse exon array) microarrays.

Article Title: Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Article Snippet: For chromosomal mapping of the probes and probeset, we used the inherent sequence information of the MoGene 1.0 ST array, which is based on the mouse genome sequence (UCSC mm8, NCBI build 36, February 2006).

Article Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
Article Snippet: Heidersbach A , Saxby C , Carver-Moore K , Huang Y , Ang Y-S , Ivey KN , Srivastava D , 2013 , Wildtype, miR-1-1 KO, miR-1 Double het P2 mixed strain heart analysis (MoGene 2.0 ST Arrays) , GSE51394 ; http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51394 , Gene Expression Omnibus (GEO).

Article Title: G-CSF regulates hematopoietic stem cell activity, in part, through activation of toll-like receptor signaling
Article Snippet: RNA from KSL SLAM cells from 5–10 mice treated with G-CSF or saline alone was prepared using the RNA XS column kit (Machery-Nagel), amplified using the NuGen Ovation system (NuGen) and hybridized to the MoGene 1.0 ST array.

Article Title: Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells
Article Snippet: All MoGene 1.0 ST arrays were processed using the “oligo” BioConductor package and all mouse 430A2 arrays with the “affy” Bioconductor package.

Article Title: Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
Article Snippet: Affymetrix probe sets originate from the Human Genome U133 Plus 2.0 array, the Mouse Genome 430 2.0 and MoGene 1.0 st arrays, the Chicken array and the Zebrafish array.



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