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ncbi software development toolkit  (Biotechnology Information)

 
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    Biotechnology Information ncbi software development toolkit
    Ncbi Software Development Toolkit, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/software+development/biotechnology+information+ncbi+software/pm42269612-923-5-3
    Average 86 stars, based on 1 article reviews
    ncbi software development toolkit - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    Software:

    Article Title: An improved Loop Mediated Isothermal Amplification based assay for the rapid Identification of Genomic DNA of Burkholderia pseudomallei
    Article Snippet: .. The location of Orf-12 region in TTS1 gene cluster was determined with the aid of The National Center for Biotechnology Information (NCBI) software (https://www.ncbi.nlm.nih.gov/), converted to fasta format and this file was then rendered into the Primer Explorer V5 (https://primerexplorer. jp/e/) software for primer designing. ..

    Article Title: An improved loop mediated isothermal amplification based assay for the rapid identification of genomic DNA of Burkholderia pseudomallei
    Article Snippet: .. The location of Orf-12 region in TTS1 gene cluster was determined with the aid of The National Center for Biotechnology Information (NCBI) software ( https://www.ncbi.nlm.nih.gov/ ), converted to fasta format and this file was then rendered into the Primer Explorer V5 ( https://primerexplorer.jp/e/ ) software for primer designing. .. The location of Orf-12 region in TTS1 gene cluster was determined with the aid of The National Center for Biotechnology Information (NCBI) software ( https://www.ncbi.nlm.nih.gov/ ), converted to fasta format and this file was then rendered into the Primer Explorer V5 ( https://primerexplorer.jp/e/ ) software for primer designing.

    Article Title: Genomic and physiological changes in a sexually selected and frugivorous bird radiation.
    Article Snippet: .. National Center for Biotechnology Information NCBI Software Development Toolkit. ..

    Article Title: Inhibition of calreticulin by protein nanoparticles carrying antisense oligonucleotides reduce gene expression and infection of Trypanosoma cruzi trypomastigotes on mammalian cells
    Article Snippet: .. To assess off-target hybridization effects NCBI BLAST software (version 2.15.0, National Center for Biotechnology Information (NCBI), Bethesda, MD, USA; available at: https://blast.ncbi.nlm.nih.gov , accessed 10 February 2024) was used. ..

    Article Title: Neural progenitor cells derived from fibroblasts induced by small molecule compounds under hypoxia for treatment of Parkinson's disease in rats
    Article Snippet: .. Gene sequences were annotated with the Swiss-Prot, National Center for Biotechnology Information (NCBI) non-redundant protein sequence (NR), and Karyotic Ortholog Group (KOG) databases using the NCBI Blast+ software (version 2.60; https://blast.ncbi. nlm.nih.gov/Blast.cgi) (Altschul et al., 1997) and the KEGG database using the KEGG Automatic Annotation Serve (KAAS) software (version 2.1; http://www. genome.jp/tools/kaas) (Moriya et al., 2007). ..

    Hybridization:

    Article Title: Inhibition of calreticulin by protein nanoparticles carrying antisense oligonucleotides reduce gene expression and infection of Trypanosoma cruzi trypomastigotes on mammalian cells
    Article Snippet: .. To assess off-target hybridization effects NCBI BLAST software (version 2.15.0, National Center for Biotechnology Information (NCBI), Bethesda, MD, USA; available at: https://blast.ncbi.nlm.nih.gov , accessed 10 February 2024) was used. ..

    Sequencing:

    Article Title: Neural progenitor cells derived from fibroblasts induced by small molecule compounds under hypoxia for treatment of Parkinson's disease in rats
    Article Snippet: .. Gene sequences were annotated with the Swiss-Prot, National Center for Biotechnology Information (NCBI) non-redundant protein sequence (NR), and Karyotic Ortholog Group (KOG) databases using the NCBI Blast+ software (version 2.60; https://blast.ncbi. nlm.nih.gov/Blast.cgi) (Altschul et al., 1997) and the KEGG database using the KEGG Automatic Annotation Serve (KAAS) software (version 2.1; http://www. genome.jp/tools/kaas) (Moriya et al., 2007). ..



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    MALDI mass spectrometry imaging of the three experimental groups. ( A ) Glutathione (GSH) at m / z 306.0768 [M-H] − , obtained <t>by</t> <t>met-ID</t> and confirmed from MSMS-fragmentation ( p = 0.032); ( B ) glutathione (GSSG) at m / z 611.1440 [M-H] − , identified based on accurate mass ( p = 0.2443); ( C ) cholesterol sulphate at m / z 465.3049 [M-H] − ( p = 0.050); and ( D ) sphingomyelin (33:1) at m / z 687.5452 [M-H] − ( p = 0.009), obtained by met-ID, respectively. Coloration of the respective group regions is given at the bottom of the figure. AS: angII + semaglutide; AV: angII + vehicle; SV: saline + vehicle. Box-plots and p -values were obtained from one-way ANOVA of the three groups.
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    Image Search Results


    MALDI mass spectrometry imaging of the three experimental groups. ( A ) Glutathione (GSH) at m / z 306.0768 [M-H] − , obtained by met-ID and confirmed from MSMS-fragmentation ( p = 0.032); ( B ) glutathione (GSSG) at m / z 611.1440 [M-H] − , identified based on accurate mass ( p = 0.2443); ( C ) cholesterol sulphate at m / z 465.3049 [M-H] − ( p = 0.050); and ( D ) sphingomyelin (33:1) at m / z 687.5452 [M-H] − ( p = 0.009), obtained by met-ID, respectively. Coloration of the respective group regions is given at the bottom of the figure. AS: angII + semaglutide; AV: angII + vehicle; SV: saline + vehicle. Box-plots and p -values were obtained from one-way ANOVA of the three groups.

    Journal: Biomedicines

    Article Title: Semaglutide Prevents Aortic Rupture and Dissection in the Angiotensin II Mouse Model

    doi: 10.3390/biomedicines14040933

    Figure Lengend Snippet: MALDI mass spectrometry imaging of the three experimental groups. ( A ) Glutathione (GSH) at m / z 306.0768 [M-H] − , obtained by met-ID and confirmed from MSMS-fragmentation ( p = 0.032); ( B ) glutathione (GSSG) at m / z 611.1440 [M-H] − , identified based on accurate mass ( p = 0.2443); ( C ) cholesterol sulphate at m / z 465.3049 [M-H] − ( p = 0.050); and ( D ) sphingomyelin (33:1) at m / z 687.5452 [M-H] − ( p = 0.009), obtained by met-ID, respectively. Coloration of the respective group regions is given at the bottom of the figure. AS: angII + semaglutide; AV: angII + vehicle; SV: saline + vehicle. Box-plots and p -values were obtained from one-way ANOVA of the three groups.

    Article Snippet: Peak m / z recalibration and preliminary metabolite identification were performed by using accurate mass measurements and the in-house developed software Met-ID (version 0.5.8) [ ] which includes searchable metabolites entries from the Human Metabolome Database (HMDB) [ ] and LIPID MAPS [ , ].

    Techniques: Mass Spectrometry, Imaging, Saline

    MALDI mass spectrometry imaging and box-plot of m / z 734.5348 (corresponding to the m / z of galactosylceramide (d18:1/16:0) [M+Cl]), obtained by met-ID, of the angII + semaglutide (orange) vs. the agII + vehicle (red) groups. The very low intensities in the saline + vehicle group (green) are also included in the figure for comparison.

    Journal: Biomedicines

    Article Title: Semaglutide Prevents Aortic Rupture and Dissection in the Angiotensin II Mouse Model

    doi: 10.3390/biomedicines14040933

    Figure Lengend Snippet: MALDI mass spectrometry imaging and box-plot of m / z 734.5348 (corresponding to the m / z of galactosylceramide (d18:1/16:0) [M+Cl]), obtained by met-ID, of the angII + semaglutide (orange) vs. the agII + vehicle (red) groups. The very low intensities in the saline + vehicle group (green) are also included in the figure for comparison.

    Article Snippet: Peak m / z recalibration and preliminary metabolite identification were performed by using accurate mass measurements and the in-house developed software Met-ID (version 0.5.8) [ ] which includes searchable metabolites entries from the Human Metabolome Database (HMDB) [ ] and LIPID MAPS [ , ].

    Techniques: Mass Spectrometry, Imaging, Saline, Comparison