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rabbit anti mouse cd44 primary antibody  (Santa Cruz Biotechnology)


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    Structured Review

    Santa Cruz Biotechnology rabbit anti mouse cd44 primary antibody
    Distribution of <t>CD44</t> + cells within intestinal epithelium. a , b Immunohistochemical (IHC) staining for Lgr5 + ISCs ( black dotted lines ) in vivo. c , d IHC staining for CD44 + cells ( black dotted lines ) in vivo. a , c Magnification ×400. Bars 50 μm. b , d Magnification ×1000. Bars 20 μm. e–n Immunocytochemical (ICC) staining for CD44 + cells in vitro. e , j Differential interference contrast (DIC) imaging. f , k Propidium iodide (PI) staining for nuclei. g , l Fluorescein isothiocyanate (FITC) for CD44 + cells ( white arrowheads crypt cells strongly positive for CD44). h , m Overlay of PI image and FITC image. i , n Overlay of FITC image and DIC image. e–i Magnification ×200. Bars 200 μm. j–n Magnification ×630. Bars 100 μm
    Rabbit Anti Mouse Cd44 Primary Antibody, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 96/100, based on 2006 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/single-cell+spatial+transcriptomics+data/rabbit+anti-mouse+IgG-HRP/pmc04846698-61-6-11
    Average 96 stars, based on 2006 article reviews
    rabbit anti mouse cd44 primary antibody - by Bioz Stars, 2026-09
    96/100 stars

    Images

    1) Product Images from "Mensenchymal stem cells can delay radiation-induced crypt death: impact on intestinal CD44 + fragments"

    Article Title: Mensenchymal stem cells can delay radiation-induced crypt death: impact on intestinal CD44 + fragments

    Journal: Cell and Tissue Research

    doi: 10.1007/s00441-015-2313-6

    Distribution of CD44 + cells within intestinal epithelium. a , b Immunohistochemical (IHC) staining for Lgr5 + ISCs ( black dotted lines ) in vivo. c , d IHC staining for CD44 + cells ( black dotted lines ) in vivo. a , c Magnification ×400. Bars 50 μm. b , d Magnification ×1000. Bars 20 μm. e–n Immunocytochemical (ICC) staining for CD44 + cells in vitro. e , j Differential interference contrast (DIC) imaging. f , k Propidium iodide (PI) staining for nuclei. g , l Fluorescein isothiocyanate (FITC) for CD44 + cells ( white arrowheads crypt cells strongly positive for CD44). h , m Overlay of PI image and FITC image. i , n Overlay of FITC image and DIC image. e–i Magnification ×200. Bars 200 μm. j–n Magnification ×630. Bars 100 μm
    Figure Legend Snippet: Distribution of CD44 + cells within intestinal epithelium. a , b Immunohistochemical (IHC) staining for Lgr5 + ISCs ( black dotted lines ) in vivo. c , d IHC staining for CD44 + cells ( black dotted lines ) in vivo. a , c Magnification ×400. Bars 50 μm. b , d Magnification ×1000. Bars 20 μm. e–n Immunocytochemical (ICC) staining for CD44 + cells in vitro. e , j Differential interference contrast (DIC) imaging. f , k Propidium iodide (PI) staining for nuclei. g , l Fluorescein isothiocyanate (FITC) for CD44 + cells ( white arrowheads crypt cells strongly positive for CD44). h , m Overlay of PI image and FITC image. i , n Overlay of FITC image and DIC image. e–i Magnification ×200. Bars 200 μm. j–n Magnification ×630. Bars 100 μm

    Techniques Used: Immunohistochemical staining, Immunohistochemistry, In Vivo, Staining, In Vitro, Imaging

    Identification of CD44 + cells. a–a’’’’’ Fluorescence-activated cell sorting (FACS) analysis for cellular phenotype. a Isotype control, IgG2a-phycoerythrin (PE). a’ CD31-PE. a’’ CD34-PE. a’’’ Isotype control, IgG2b-allophycocyanin (APC). a’’’’ CD44-APC ( lo low-positive for CD44, hi high-positive for CD44). a’’’’’ CD45-APC. b Development of CD44 + ISC in 3D-culture system. Numbers represent days. Top Magnification ×400. Bar 50 μm. Bottom Magnification ×200. Bars 100 μm. c–c’’ Colony-forming efficacies of CD44 - cells and CD44 + cells. c CD44 - cells in 3D-culture system for 14 days. c’ CD44 + cells in 3D-culture system for 14 days. c , c’ Magnification ×40. Bars 500 μm. c’’ Comparision of colony-forming efficacy per 100 sorted cells seeded in one well of a 96-well plate. CD44 - group in 48 wells; CD44 + group in 48 wells. Data represent means ± SD of 48 independent measurements ( n = 48). Bars SD values. Paired t -test was used for data analysis. * P ≤ 0.05 represents high significance (CD44 + group versus CD44 - group). All experimental procedures were repeated twice. d–d’’’’ Transmission electron microscope imaging of CD44 + ISC differentiation. CD44 + ISC were cultured in the 3D-system for 6 days and formed a cystic structure. d Cystic structure of a single CD44 + ISC-derived organoid at 6 days. Boxed areas are shown at higher magnification in d’–d’’’’ ( Lu lumen). Magnification ×400. Bar 50 μm. d’ Absorptive cell ( Ab ). d’’ Endocrine cell ( En ). d’’’ Goblet cell ( Go ). d’’’’ Paneth cell ( Pa ). Black arrowhead in d’ indicates brush border. Black arrowheads in d’’–d’’’’ indicates granules. d’–d’’’’ Magnification ×1500. Bars 5 μm
    Figure Legend Snippet: Identification of CD44 + cells. a–a’’’’’ Fluorescence-activated cell sorting (FACS) analysis for cellular phenotype. a Isotype control, IgG2a-phycoerythrin (PE). a’ CD31-PE. a’’ CD34-PE. a’’’ Isotype control, IgG2b-allophycocyanin (APC). a’’’’ CD44-APC ( lo low-positive for CD44, hi high-positive for CD44). a’’’’’ CD45-APC. b Development of CD44 + ISC in 3D-culture system. Numbers represent days. Top Magnification ×400. Bar 50 μm. Bottom Magnification ×200. Bars 100 μm. c–c’’ Colony-forming efficacies of CD44 - cells and CD44 + cells. c CD44 - cells in 3D-culture system for 14 days. c’ CD44 + cells in 3D-culture system for 14 days. c , c’ Magnification ×40. Bars 500 μm. c’’ Comparision of colony-forming efficacy per 100 sorted cells seeded in one well of a 96-well plate. CD44 - group in 48 wells; CD44 + group in 48 wells. Data represent means ± SD of 48 independent measurements ( n = 48). Bars SD values. Paired t -test was used for data analysis. * P ≤ 0.05 represents high significance (CD44 + group versus CD44 - group). All experimental procedures were repeated twice. d–d’’’’ Transmission electron microscope imaging of CD44 + ISC differentiation. CD44 + ISC were cultured in the 3D-system for 6 days and formed a cystic structure. d Cystic structure of a single CD44 + ISC-derived organoid at 6 days. Boxed areas are shown at higher magnification in d’–d’’’’ ( Lu lumen). Magnification ×400. Bar 50 μm. d’ Absorptive cell ( Ab ). d’’ Endocrine cell ( En ). d’’’ Goblet cell ( Go ). d’’’’ Paneth cell ( Pa ). Black arrowhead in d’ indicates brush border. Black arrowheads in d’’–d’’’’ indicates granules. d’–d’’’’ Magnification ×1500. Bars 5 μm

    Techniques Used: Fluorescence, FACS, Control, Transmission Assay, Microscopy, Imaging, Cell Culture, Derivative Assay

    CD44 + ISCs resemble CBC stem cells. a–a’’ Strategy for sorting CD44 - , CD44 low+ and CD44 hi+ subpopulations by using the FACS technique ( R1 determining the cell-zone, R2 determining viable cells, PI propidium iodide, APC allophycocyanin). b Semi-quantitative reverse transcription (RT) followed by the polymerase chain reaction (PCR) for ISC-related gene-expression in sorted cells. Fold expression values were normalized to the CD44 - group. Data represent means ± SD of six independent measurements ( n = 6). Bars indicate value of SD. The paired t -test was used for data analysis. * P ≤ 0.05 represents high significance (CD44 hi+ group versus CD44 low+ group); $ P ≤ 0.05 represents low significance (CD44 hi+ group versus CD44 low+ group); ns represents no statistic differences between the CD44 hi+ group and CD44 low+ group. P -values for Lgr5 , Bmi1 , Hopx , mTERT , Ascl2 , Smoc2 , Lrig1 , Rnf43 and Prominin-1 are respectively 0.016, 0.036, 0.010, 0.844, 0.007, 0.001, 0.041, 0.005 and 0.859. c , c’ Colony-forming efficacy of CD44 low+ and CD44 hi+ cells in 3D-culture system for 14 days. c CD44 low+ group. c’ CD44 hi+ group. Magnification ×40. Bars 500 μm
    Figure Legend Snippet: CD44 + ISCs resemble CBC stem cells. a–a’’ Strategy for sorting CD44 - , CD44 low+ and CD44 hi+ subpopulations by using the FACS technique ( R1 determining the cell-zone, R2 determining viable cells, PI propidium iodide, APC allophycocyanin). b Semi-quantitative reverse transcription (RT) followed by the polymerase chain reaction (PCR) for ISC-related gene-expression in sorted cells. Fold expression values were normalized to the CD44 - group. Data represent means ± SD of six independent measurements ( n = 6). Bars indicate value of SD. The paired t -test was used for data analysis. * P ≤ 0.05 represents high significance (CD44 hi+ group versus CD44 low+ group); $ P ≤ 0.05 represents low significance (CD44 hi+ group versus CD44 low+ group); ns represents no statistic differences between the CD44 hi+ group and CD44 low+ group. P -values for Lgr5 , Bmi1 , Hopx , mTERT , Ascl2 , Smoc2 , Lrig1 , Rnf43 and Prominin-1 are respectively 0.016, 0.036, 0.010, 0.844, 0.007, 0.001, 0.041, 0.005 and 0.859. c , c’ Colony-forming efficacy of CD44 low+ and CD44 hi+ cells in 3D-culture system for 14 days. c CD44 low+ group. c’ CD44 hi+ group. Magnification ×40. Bars 500 μm

    Techniques Used: Reverse Transcription, Polymerase Chain Reaction, Gene Expression, Expressing

    Epithelial homeostasis in CD44 + ISC-derived organoid. a , b TUNEL staining for apoptotic cells in normal epithelium. c , d IHC staining of Ki67 for proliferative cells within normal epithelium. a , c Magnification ×200. Bars 100 μm. b , d Magnification ×400. Bars 50 μm. e–j Epithelial homeostasis in vitro. e–g TUNEL staining for apoptotic cells in CD44 + ISC-derived organoid. e DAPI staining ( blue ) for nuclei. f dUTP-FITC ( green ) for apoptotic cells. g DAPI image merged with dUTP-FITC image. Magnification ×100. Bars 200 μm. h–j ICC staining for proliferative cells in CD44 + ISC-derived organoid. h DAPI staining for nuclei. i Ki67-FITC for proliferative cells. j DAPI image merged with Ki67-FITC image. Magnification ×200. Bar 100 μm. k Representation of an organoid
    Figure Legend Snippet: Epithelial homeostasis in CD44 + ISC-derived organoid. a , b TUNEL staining for apoptotic cells in normal epithelium. c , d IHC staining of Ki67 for proliferative cells within normal epithelium. a , c Magnification ×200. Bars 100 μm. b , d Magnification ×400. Bars 50 μm. e–j Epithelial homeostasis in vitro. e–g TUNEL staining for apoptotic cells in CD44 + ISC-derived organoid. e DAPI staining ( blue ) for nuclei. f dUTP-FITC ( green ) for apoptotic cells. g DAPI image merged with dUTP-FITC image. Magnification ×100. Bars 200 μm. h–j ICC staining for proliferative cells in CD44 + ISC-derived organoid. h DAPI staining for nuclei. i Ki67-FITC for proliferative cells. j DAPI image merged with Ki67-FITC image. Magnification ×200. Bar 100 μm. k Representation of an organoid

    Techniques Used: Derivative Assay, TUNEL Assay, Staining, Immunohistochemistry, In Vitro

    Related Articles

    Control:

    Article Title: CMAH-Targeted Knock-In of Inducible Heme Oxygenase-1 and Constitutive CD47 in GGTA1-Knockout Pigs for Xenotransplantation.
    Article Snippet: Protein expression was visualized using an ECL etection reagent (GE Healthcare, Buckinghamshire, UK). .. The ollowing primary and secondary antibodies were used: mouse onoclonal anti-HO1 (Abcam) with anti-mouse IgG κ BP-HRP Santa Cruz Biotechnology, Dallas, TX, USA); rabbit monoclonal nti-CD47 (Abcam) with mouse anti-rabbit IgG-HRP (Santa Cruz iotechnology); and rabbit monoclonal anti-Vinculin (Abcam) ith mouse anti-rabbit IgG-HRP (Santa Cruz Biotechnology) as loading control. .. .11 Flow Cytometry eripheral blood mononuclear cells (PBMCs) were isolated from eparinized blood using density gradient centrifugation with icoll-Paque (GE Healthcare, Chicago, IL, USA), according to the anufacturer’s instructions.

    Immunoprecipitation:

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria.
    Article Snippet: Recombinant TGFβ and TGFβ type I receptor inhibitor SB431542 were purchased from Sigma-Aldrich (T7039 and S4696). .. The following antibodies were used: PC7-conjugated anti-human CD235a (GPA–PC7, 1:50) supplied by Beckman Coulter, clone 11E4B-7-6, A71564; PE-conjugated anti-Band3 (Band 3–PE, 1:100) supplied by IBGRL, clone BRIC 6, 9439PE; APC-conjugated anti-CD49d (integrin α4–APC, 1:20) supplied by Beckman Coulter, clone HP2/1, B01682; anti-human GATA1 (GATA1, 1:10) supplied by Santa Cruz Biotechnology, clone N1, sc-266X; anti-influenza haemagglutinin epitope tag HA.11 (SMAD3–HA, 1:10) supplied by BioLegend, clone 16B12, MMS-101P; anti-human cyclin D3 (cyclin D3, 1:250) supplied by Santa Cruz Biotechnology, clone D-7, sc-6283; anti-human SMAD2 (SMAD2, 1:500) supplied by Santa Cruz Biotechnology, clone S-20, sc-6200; anti-β-actin (β-actin, 1:1,000) supplied by Santa Cruz Biotechnology, clone C4, sc-47778; anti-cyclin D3 (cyclin D3, 1:2,000) supplied by Cell Signaling Technology, clone DCS22, 2936S; rabbit anti-mouse IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2005; goat anti-rabbit IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2004; rabbit anti-goat IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc-2768; anti-human SMAD3 (SMAD3, 10 μg in 100 μl for immunoprecipitation and 1:1,000 for western blot) supplied by Cell Signaling Technology, clone C67H9, 9523; anti-human GATA1 (GATA1, 10 μg in 100 μl) supplied by Abcam, ab11852; and normal rabbit IgG, (IgG, 1 μg in 100 μl) supplied by Cell Signaling Technology, 2729S. ..

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria
    Article Snippet: Recombinant TGFβ and TGFβ type I receptor inhibitor SB431542 were purchased from Sigma-Aldrich (T7039 and S4696). .. The following antibodies were used: PC7-conjugated anti-human CD235a (GPA–PC7, 1:50) supplied by Beckman Coulter, clone 11E4B-7-6, A71564; PE-conjugated anti-Band3 (Band 3–PE, 1:100) supplied by IBGRL, clone BRIC 6, 9439PE; APC-conjugated anti-CD49d (integrin α4–APC, 1:20) supplied by Beckman Coulter, clone HP2/1, B01682 ; anti-human GATA1 (GATA1, 1:10) supplied by Santa Cruz Biotechnology, clone N1, sc-266X; anti-influenza haemagglutinin epitope tag HA.11 (SMAD3–HA, 1:10) supplied by BioLegend, clone 16B12, MMS-101P; anti-human cyclin D3 (cyclin D3, 1:250) supplied by Santa Cruz Biotechnology, clone D-7, sc-6283; anti-human SMAD2 (SMAD2, 1:500) supplied by Santa Cruz Biotechnology, clone S-20, sc-6200; anti-β-actin (β-actin, 1:1,000) supplied by Santa Cruz Biotechnology, clone C4, sc-47778; anti-cyclin D3 (cyclin D3, 1:2,000) supplied by Cell Signaling Technology, clone DCS22, 2936S; rabbit anti-mouse IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2005; goat anti-rabbit IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2004; rabbit anti-goat IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc-2768; anti-human SMAD3 (SMAD3, 10 μg in 100 μl for immunoprecipitation and 1:1,000 for western blot) supplied by Cell Signaling Technology, clone C67H9, 9523; anti-human GATA1 (GATA1, 10 μg in 100 μl) supplied by Abcam, ab11852; and normal rabbit IgG, (IgG, 1 μg in 100 μl) supplied by Cell Signaling Technology, 2729S. ..

    Western Blot:

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria.
    Article Snippet: Recombinant TGFβ and TGFβ type I receptor inhibitor SB431542 were purchased from Sigma-Aldrich (T7039 and S4696). .. The following antibodies were used: PC7-conjugated anti-human CD235a (GPA–PC7, 1:50) supplied by Beckman Coulter, clone 11E4B-7-6, A71564; PE-conjugated anti-Band3 (Band 3–PE, 1:100) supplied by IBGRL, clone BRIC 6, 9439PE; APC-conjugated anti-CD49d (integrin α4–APC, 1:20) supplied by Beckman Coulter, clone HP2/1, B01682; anti-human GATA1 (GATA1, 1:10) supplied by Santa Cruz Biotechnology, clone N1, sc-266X; anti-influenza haemagglutinin epitope tag HA.11 (SMAD3–HA, 1:10) supplied by BioLegend, clone 16B12, MMS-101P; anti-human cyclin D3 (cyclin D3, 1:250) supplied by Santa Cruz Biotechnology, clone D-7, sc-6283; anti-human SMAD2 (SMAD2, 1:500) supplied by Santa Cruz Biotechnology, clone S-20, sc-6200; anti-β-actin (β-actin, 1:1,000) supplied by Santa Cruz Biotechnology, clone C4, sc-47778; anti-cyclin D3 (cyclin D3, 1:2,000) supplied by Cell Signaling Technology, clone DCS22, 2936S; rabbit anti-mouse IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2005; goat anti-rabbit IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2004; rabbit anti-goat IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc-2768; anti-human SMAD3 (SMAD3, 10 μg in 100 μl for immunoprecipitation and 1:1,000 for western blot) supplied by Cell Signaling Technology, clone C67H9, 9523; anti-human GATA1 (GATA1, 10 μg in 100 μl) supplied by Abcam, ab11852; and normal rabbit IgG, (IgG, 1 μg in 100 μl) supplied by Cell Signaling Technology, 2729S. ..

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria
    Article Snippet: Recombinant TGFβ and TGFβ type I receptor inhibitor SB431542 were purchased from Sigma-Aldrich (T7039 and S4696). .. The following antibodies were used: PC7-conjugated anti-human CD235a (GPA–PC7, 1:50) supplied by Beckman Coulter, clone 11E4B-7-6, A71564; PE-conjugated anti-Band3 (Band 3–PE, 1:100) supplied by IBGRL, clone BRIC 6, 9439PE; APC-conjugated anti-CD49d (integrin α4–APC, 1:20) supplied by Beckman Coulter, clone HP2/1, B01682 ; anti-human GATA1 (GATA1, 1:10) supplied by Santa Cruz Biotechnology, clone N1, sc-266X; anti-influenza haemagglutinin epitope tag HA.11 (SMAD3–HA, 1:10) supplied by BioLegend, clone 16B12, MMS-101P; anti-human cyclin D3 (cyclin D3, 1:250) supplied by Santa Cruz Biotechnology, clone D-7, sc-6283; anti-human SMAD2 (SMAD2, 1:500) supplied by Santa Cruz Biotechnology, clone S-20, sc-6200; anti-β-actin (β-actin, 1:1,000) supplied by Santa Cruz Biotechnology, clone C4, sc-47778; anti-cyclin D3 (cyclin D3, 1:2,000) supplied by Cell Signaling Technology, clone DCS22, 2936S; rabbit anti-mouse IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2005; goat anti-rabbit IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc2004; rabbit anti-goat IgG–HRP (1:20,000) supplied by Santa Cruz Biotechnology, sc-2768; anti-human SMAD3 (SMAD3, 10 μg in 100 μl for immunoprecipitation and 1:1,000 for western blot) supplied by Cell Signaling Technology, clone C67H9, 9523; anti-human GATA1 (GATA1, 10 μg in 100 μl) supplied by Abcam, ab11852; and normal rabbit IgG, (IgG, 1 μg in 100 μl) supplied by Cell Signaling Technology, 2729S. ..

    Article Title: McIdas localizes to centrioles and controls centriole numbers through PLK4-dependent phosphorylation
    Article Snippet: The antibodies used for immunoprecipitation were: mouse anti-GFP (clones 7.1 & 13.1, Roche), mouse anti-HA (clone F-7, Santa Cruz Biotechnology), mouse anti-myc (clone 4A6, Merck) and rabbit anti-hMcIdas (Pefani et al, ). .. The primary and secondary antibodies used for western blot analysis were: mouse anti-GFP (1:1000, Roche), mouse anti-myc (1:1000, clone 4A6, Merck), mouse anti-PLK4 (1:500, Merck), rabbit anti-STIL (1:500, Abcam), mouse anti-HA (1:1000, Santa Cruz Biotechnology), mouse anti-Flag (1:1500, Sigma-Aldrich), rabbit anti-hMcIdas (Pefani et al, ), goat anti-Rabbit IgG-HRP (1:1000–1:3000, Merck Millipore) and goat anti-Mouse IgG-HRP (1:1000–1:3000, Merck Millipore). ..

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria.
    Article Snippet: .. 4 nature portfolio | reporting sum m ary April 2023 Materials & experimental systems n/a Involved in the study Antibodies Eukaryotic cell lines Palaeontology and archaeology Animals and other organisms Clinical data Dual use research of concern Plants Methods n/a Involved in the study ChIP-seq Flow cytometry MRI-based neuroimaging Antibodies Antibodies used PC7-conjugated anti-human CD235a (GPA-PC7 1:50) supplied by Beckman Coulter, clone # 11E4B-7-6, catalog #A71564; PE-conjugated anti-Band3 (Band3-PE 1:100) supplied by IBGRL, clone # BRIC 6, catalog # 9439CSPE; APC-conjugated anti-CD49d (α-4 integrin-APC 1:20) supplied by Beckman Coulter, clone # HP2/1, catalog #B01682; Anti-human GATA1 (GATA1 1:10) supplied by Santa Cruz Biotechnology, clone #N1 catalog #sc-266X; Anti-influenza hemagglutinin epitope tag HA.11(SMAD3-HA 1:10), supplied by Biolegend, clone #16B12, catalog #MMS-101P; Anti-human CyclinD3 (CyclinD3 1:250) supplied by Santa Cruz Biotechnology, clone #D-7, catalog #sc-6283; Anti-human Smad2 (Smad2 1:500) supplied by Santa Cruz Biotechnology, clone #S-20, catalog #sc-6200; Anti-beta-actin (beta-actin 1:1000) supplied by Santa Cruz Biotechnology, clone #C4, catalog #sc-47778; Rabbit anti-mouse IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2005; Goat anti-rabbit IgG-HRP(1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2004; Rabbit anti-goat IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc-2768; Anti-human SMAD3 (SMAD3 10μg in 100 μL for IP and 1:1000 for WB) supplied by Cell Signaling Technology clone #C67H9, catalog #9523; Anti-human GATA1 (GATA1 10μg in 100 μL) supplied by Abcam catalog #ab11852; Normal Rabbit IgG, (IgG, 1μg in 100 μL), supplied by Cell Signaling Technology, catalog #2729S. ..

    Chromatin Immunoprecipitation:

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria.
    Article Snippet: .. 4 nature portfolio | reporting sum m ary April 2023 Materials & experimental systems n/a Involved in the study Antibodies Eukaryotic cell lines Palaeontology and archaeology Animals and other organisms Clinical data Dual use research of concern Plants Methods n/a Involved in the study ChIP-seq Flow cytometry MRI-based neuroimaging Antibodies Antibodies used PC7-conjugated anti-human CD235a (GPA-PC7 1:50) supplied by Beckman Coulter, clone # 11E4B-7-6, catalog #A71564; PE-conjugated anti-Band3 (Band3-PE 1:100) supplied by IBGRL, clone # BRIC 6, catalog # 9439CSPE; APC-conjugated anti-CD49d (α-4 integrin-APC 1:20) supplied by Beckman Coulter, clone # HP2/1, catalog #B01682; Anti-human GATA1 (GATA1 1:10) supplied by Santa Cruz Biotechnology, clone #N1 catalog #sc-266X; Anti-influenza hemagglutinin epitope tag HA.11(SMAD3-HA 1:10), supplied by Biolegend, clone #16B12, catalog #MMS-101P; Anti-human CyclinD3 (CyclinD3 1:250) supplied by Santa Cruz Biotechnology, clone #D-7, catalog #sc-6283; Anti-human Smad2 (Smad2 1:500) supplied by Santa Cruz Biotechnology, clone #S-20, catalog #sc-6200; Anti-beta-actin (beta-actin 1:1000) supplied by Santa Cruz Biotechnology, clone #C4, catalog #sc-47778; Rabbit anti-mouse IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2005; Goat anti-rabbit IgG-HRP(1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2004; Rabbit anti-goat IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc-2768; Anti-human SMAD3 (SMAD3 10μg in 100 μL for IP and 1:1000 for WB) supplied by Cell Signaling Technology clone #C67H9, catalog #9523; Anti-human GATA1 (GATA1 10μg in 100 μL) supplied by Abcam catalog #ab11852; Normal Rabbit IgG, (IgG, 1μg in 100 μL), supplied by Cell Signaling Technology, catalog #2729S. ..

    Flow Cytometry:

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria.
    Article Snippet: .. 4 nature portfolio | reporting sum m ary April 2023 Materials & experimental systems n/a Involved in the study Antibodies Eukaryotic cell lines Palaeontology and archaeology Animals and other organisms Clinical data Dual use research of concern Plants Methods n/a Involved in the study ChIP-seq Flow cytometry MRI-based neuroimaging Antibodies Antibodies used PC7-conjugated anti-human CD235a (GPA-PC7 1:50) supplied by Beckman Coulter, clone # 11E4B-7-6, catalog #A71564; PE-conjugated anti-Band3 (Band3-PE 1:100) supplied by IBGRL, clone # BRIC 6, catalog # 9439CSPE; APC-conjugated anti-CD49d (α-4 integrin-APC 1:20) supplied by Beckman Coulter, clone # HP2/1, catalog #B01682; Anti-human GATA1 (GATA1 1:10) supplied by Santa Cruz Biotechnology, clone #N1 catalog #sc-266X; Anti-influenza hemagglutinin epitope tag HA.11(SMAD3-HA 1:10), supplied by Biolegend, clone #16B12, catalog #MMS-101P; Anti-human CyclinD3 (CyclinD3 1:250) supplied by Santa Cruz Biotechnology, clone #D-7, catalog #sc-6283; Anti-human Smad2 (Smad2 1:500) supplied by Santa Cruz Biotechnology, clone #S-20, catalog #sc-6200; Anti-beta-actin (beta-actin 1:1000) supplied by Santa Cruz Biotechnology, clone #C4, catalog #sc-47778; Rabbit anti-mouse IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2005; Goat anti-rabbit IgG-HRP(1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2004; Rabbit anti-goat IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc-2768; Anti-human SMAD3 (SMAD3 10μg in 100 μL for IP and 1:1000 for WB) supplied by Cell Signaling Technology clone #C67H9, catalog #9523; Anti-human GATA1 (GATA1 10μg in 100 μL) supplied by Abcam catalog #ab11852; Normal Rabbit IgG, (IgG, 1μg in 100 μL), supplied by Cell Signaling Technology, catalog #2729S. ..

    Magnetic Resonance Imaging:

    Article Title: Reduced cyclin D3 expression in erythroid cells protects against malaria.
    Article Snippet: .. 4 nature portfolio | reporting sum m ary April 2023 Materials & experimental systems n/a Involved in the study Antibodies Eukaryotic cell lines Palaeontology and archaeology Animals and other organisms Clinical data Dual use research of concern Plants Methods n/a Involved in the study ChIP-seq Flow cytometry MRI-based neuroimaging Antibodies Antibodies used PC7-conjugated anti-human CD235a (GPA-PC7 1:50) supplied by Beckman Coulter, clone # 11E4B-7-6, catalog #A71564; PE-conjugated anti-Band3 (Band3-PE 1:100) supplied by IBGRL, clone # BRIC 6, catalog # 9439CSPE; APC-conjugated anti-CD49d (α-4 integrin-APC 1:20) supplied by Beckman Coulter, clone # HP2/1, catalog #B01682; Anti-human GATA1 (GATA1 1:10) supplied by Santa Cruz Biotechnology, clone #N1 catalog #sc-266X; Anti-influenza hemagglutinin epitope tag HA.11(SMAD3-HA 1:10), supplied by Biolegend, clone #16B12, catalog #MMS-101P; Anti-human CyclinD3 (CyclinD3 1:250) supplied by Santa Cruz Biotechnology, clone #D-7, catalog #sc-6283; Anti-human Smad2 (Smad2 1:500) supplied by Santa Cruz Biotechnology, clone #S-20, catalog #sc-6200; Anti-beta-actin (beta-actin 1:1000) supplied by Santa Cruz Biotechnology, clone #C4, catalog #sc-47778; Rabbit anti-mouse IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2005; Goat anti-rabbit IgG-HRP(1:20000), supplied by Santa Cruz Biotechnology, catalog #sc2004; Rabbit anti-goat IgG-HRP (1:20000), supplied by Santa Cruz Biotechnology, catalog #sc-2768; Anti-human SMAD3 (SMAD3 10μg in 100 μL for IP and 1:1000 for WB) supplied by Cell Signaling Technology clone #C67H9, catalog #9523; Anti-human GATA1 (GATA1 10μg in 100 μL) supplied by Abcam catalog #ab11852; Normal Rabbit IgG, (IgG, 1μg in 100 μL), supplied by Cell Signaling Technology, catalog #2729S. ..

    Incubation:

    Article Title: MicroRNA-601 Enhances Osimertinib Sensitivity by Targeting Transient Receptor Potential Mucolipin 3 in Non-small Cell Lung Cancer Cells
    Article Snippet: Subsequently, the blocked membranes were probed overnight at 4°C with primary antibodies specific for TRPML3 (1:1,000, ProteinTech), poly(ADP-ribose) polymerase (PARP; 1:1,000, Cell Signaling Technology), and GAPDH (1:1,000, BioSS). .. For secondary antibody detection, the membranes were incubated for 1 hour at 26°C in a 1:2,500 dilution of HRP-conjugated anti-rabbit or anti-mouse IgG (Santa Cruz Biotechnology). .. Immunoreactive bands were visualized via enhanced chemiluminescence on an Azure Biosystems C300 imager and quantified with AzureSpot v2.0 software (Azure Biosystems).



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    (a) Simplified cross-section of the human epidermis, highlighting squamous cells, melanocytes and basal cells. Coloured regions represent cSCC (green), which originates from squamous cells, melanoma (orange), which originates from melanocytes, and BCC (blue), which originates from basal cells. Two orange melanocytes are shown in the dermal region as occurs in invasive melanoma; other cells in the lower dermis layer are not depicted. (b) Overview of sample design and technologies used to generate data for this project. ROI - region of interest; FOV - field of view; S - cSCC; B - BCC; M - melanoma; HC - healthy (cancer patient); HNC - healthy (non-cancer patient donor). Technologies included are single cell RNA sequencing for fresh samples, single nuclei sequencing for formalin-fixed samples, Visium, Xenium, CosMX, GeoMX DSP for whole transcriptome, GeoMX DSP for proteins, Polaris, RNAscope, the proximal ligation assay, spatial glycomics and CODEX.

    Journal: bioRxiv

    Article Title: Integrating 12 Spatial and Single Cell Technologies to Characterise Tumour Neighbourhoods and Cellular Interactions in three Skin Cancer Types

    doi: 10.1101/2025.07.25.666708

    Figure Lengend Snippet: (a) Simplified cross-section of the human epidermis, highlighting squamous cells, melanocytes and basal cells. Coloured regions represent cSCC (green), which originates from squamous cells, melanoma (orange), which originates from melanocytes, and BCC (blue), which originates from basal cells. Two orange melanocytes are shown in the dermal region as occurs in invasive melanoma; other cells in the lower dermis layer are not depicted. (b) Overview of sample design and technologies used to generate data for this project. ROI - region of interest; FOV - field of view; S - cSCC; B - BCC; M - melanoma; HC - healthy (cancer patient); HNC - healthy (non-cancer patient donor). Technologies included are single cell RNA sequencing for fresh samples, single nuclei sequencing for formalin-fixed samples, Visium, Xenium, CosMX, GeoMX DSP for whole transcriptome, GeoMX DSP for proteins, Polaris, RNAscope, the proximal ligation assay, spatial glycomics and CODEX.

    Article Snippet: Cells expressing the two genes are visualized on single-cell level resolution spatial data from STOmics and Curio-Seeker (Takara Bio, USA) melanoma samples and appear to be in spatial proximity ( ).

    Techniques: RNA Sequencing, Sequencing, RNAscope, Ligation

    (a) Gene specificity score (GSS) and association of spatial spots with skin cancer heritability. GSS score for each gene in a spot/cell represents the enrichment of the gene as a top rank most abundant gene in the spot/cell and its neighbour spots/cells in an anatomical region, a spatial domain, or a cell type. The p-value shows the spatial heritability enrichment significance of a spot with a trait based on SNPs mapped to the genes with high GSS scores (one-sided Z-test for stratified coefficient different to 0). The p-value is more significant if the SNPs that are mapped to the high GSS genes explain a higher proportion of heritability for the trait. (b) Cell types with the highest enrichment of heritability explained by SNPs tagged to GSS genes of cells in a cell type. The white asterisks indicate the most enriched cell-type for heritability of cutaneous melanoma, cSCC and BCC traits. (c) gsMAP significance spatial heritability enrichment is shown at single-cell resolution across the tissue (upper tissue plots) or per annotated skin regions (lower violin plots) from the cosMx data of the sample mel48974. (d) LR pairs with significant association with SNP heritability explained by the corresponding cell types. The rectangles show cases where both L and R genes had PCC >0.3 between GSS of the gene and the gsMAP P-values (the significance level for the LD stratified coefficients for the spot bigger than 0). The results suggest which LR pairs are related with the heritability of a cell type pairs. (e) GSS of two LR pairs showing specificity of the L and R genes to tissue regions at the immune-rich dermal layers and the epidermis of the skin. (f) Manhattan plot showing top significant GWAS SNPs co-localizing with genes in melanocytes (red) and T cells (blue) that had the highest Pearson correlation between GSS and the gsMAP trait association P-value or associated with SNPs with genome-wide significance. The Y-axis shows the -log(P-value) from GWAS analysis.

    Journal: bioRxiv

    Article Title: Integrating 12 Spatial and Single Cell Technologies to Characterise Tumour Neighbourhoods and Cellular Interactions in three Skin Cancer Types

    doi: 10.1101/2025.07.25.666708

    Figure Lengend Snippet: (a) Gene specificity score (GSS) and association of spatial spots with skin cancer heritability. GSS score for each gene in a spot/cell represents the enrichment of the gene as a top rank most abundant gene in the spot/cell and its neighbour spots/cells in an anatomical region, a spatial domain, or a cell type. The p-value shows the spatial heritability enrichment significance of a spot with a trait based on SNPs mapped to the genes with high GSS scores (one-sided Z-test for stratified coefficient different to 0). The p-value is more significant if the SNPs that are mapped to the high GSS genes explain a higher proportion of heritability for the trait. (b) Cell types with the highest enrichment of heritability explained by SNPs tagged to GSS genes of cells in a cell type. The white asterisks indicate the most enriched cell-type for heritability of cutaneous melanoma, cSCC and BCC traits. (c) gsMAP significance spatial heritability enrichment is shown at single-cell resolution across the tissue (upper tissue plots) or per annotated skin regions (lower violin plots) from the cosMx data of the sample mel48974. (d) LR pairs with significant association with SNP heritability explained by the corresponding cell types. The rectangles show cases where both L and R genes had PCC >0.3 between GSS of the gene and the gsMAP P-values (the significance level for the LD stratified coefficients for the spot bigger than 0). The results suggest which LR pairs are related with the heritability of a cell type pairs. (e) GSS of two LR pairs showing specificity of the L and R genes to tissue regions at the immune-rich dermal layers and the epidermis of the skin. (f) Manhattan plot showing top significant GWAS SNPs co-localizing with genes in melanocytes (red) and T cells (blue) that had the highest Pearson correlation between GSS and the gsMAP trait association P-value or associated with SNPs with genome-wide significance. The Y-axis shows the -log(P-value) from GWAS analysis.

    Article Snippet: Cells expressing the two genes are visualized on single-cell level resolution spatial data from STOmics and Curio-Seeker (Takara Bio, USA) melanoma samples and appear to be in spatial proximity ( ).

    Techniques: Genome Wide

    Journal: Cell

    Article Title: Spatiotemporal analysis of human intestinal development at single-cell resolution

    doi: 10.1016/j.cell.2020.12.016

    Figure Lengend Snippet:

    Article Snippet: STAR-FINDer Single Cell and Spatial Transcriptomics Data Portal , This study , https://simmonslab.shinyapps.io/FetalAtlasDataPortal.

    Techniques: Conjugation Assay, Recombinant, Saline, Modification, Plasmid Preparation, Gene Expression, RNAscope, Generated, Software