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sequence-centered analysis software  (GeneWorks)

 
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    GeneWorks sequence-centered analysis software
    Sequence Centered Analysis Software, supplied by GeneWorks, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequencing+analysis+program+agent/sequence+analysis+program/pm17758816-63-0-0
    Average 90 stars, based on 1 article reviews
    sequence-centered analysis software - by Bioz Stars, 2026-09
    90/100 stars

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    Sequencing:

    Article Title: Products & materials.
    Article Snippet: Data Analysis Software Click-X data analysis software includes a feature called Scan-X, which is optical graph recognition (OGR) import software.. Used with a compatible scanner, it provides the capability to import, convert, and consolidate data.. Scan-X's OGR ability transforms pictures, graphs, screens, and multiplots directly into Click-X's files.

    Article Title: Sugar-regulatory sequences in alpha-amylase genes
    Article Snippet: .. Such alignment can be preformed using a variety of commercially available sequence analysis programs, such as the “GENEWORKS” program, or the local alignment program LALIGN with a ktup of 1, default parameters and the default PAM. .. A preferred alignment is the one performed by the CLUSTAL-W program from MacVector (TM), operated with an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM similarity matrix.

    Article Title: Alternative Splicing in the Ligand Binding Domain of Mouse ApoE Receptor-2 Produces Receptor Variants Binding Reelin but Not α2-Macroglobulin
    Article Snippet: .. Upon computer-assisted sequence alignment (Geneworks) with human apoER2 and chicken LR8B, it became evident that repeats 4–6 are missing from this transcript. ..

    Article Title: Abundant expression of fibronectin is a major feature of leukemic dendritic cells differentiated from patients with acute myeloid leukemia.
    Article Snippet: Sequence homology searches were performed in the databases provided by the National Center for Biotechnology Information (NCBI, Bethesda, MD, USA) using the BLAST program. .. Sequence alignments were performed with the Geneworks sequence analysis software (Oxford Molecular). ..

    Article Title: Prostaglandin metabolism in the ovine corpus luteum: catabolism of prostaglandin F(2alpha) (PGF(2alpha)) coincides with resistance of the corpus luteum to PGF(2alpha).
    Article Snippet: Plasmid containing the 394-bp PGDH cDNA was sequenced (Geneseek, Lincoln, NE). .. Sequence analysis (Geneworks; Intelligenetics, Upland Park, CA) led to the determination that the cDNA was 93.1%, 98.2%, 87%, and 89.3% homologous to human, water buffalo, rat, and guinea pig PGDH, respectively (data not shown). ..

    Article Title: Molecular characterization of a phospholipase C beta potentially involved in moth olfactory transduction.
    Article Snippet: .. A sequence analysis program (Geneworks; Intelligenetics) predicted the secondary structure of this region to be an a-helix, with residues K915, K920, K923, K925, K931, K932, K938, K939, K942, K944, K946, K952, K961, K962, andK964 forming a positively charged surface on the helix. ..

    Polymerase Chain Reaction:

    Article Title: Products & materials.
    Article Snippet: Data Analysis Software Click-X data analysis software includes a feature called Scan-X, which is optical graph recognition (OGR) import software.. Used with a compatible scanner, it provides the capability to import, convert, and consolidate data.. Scan-X's OGR ability transforms pictures, graphs, screens, and multiplots directly into Click-X's files.

    Software:

    Article Title: Products & materials.
    Article Snippet: Data Analysis Software Click-X data analysis software includes a feature called Scan-X, which is optical graph recognition (OGR) import software.. Used with a compatible scanner, it provides the capability to import, convert, and consolidate data.. Scan-X's OGR ability transforms pictures, graphs, screens, and multiplots directly into Click-X's files.

    Article Title: Abundant expression of fibronectin is a major feature of leukemic dendritic cells differentiated from patients with acute myeloid leukemia.
    Article Snippet: Sequence homology searches were performed in the databases provided by the National Center for Biotechnology Information (NCBI, Bethesda, MD, USA) using the BLAST program. .. Sequence alignments were performed with the Geneworks sequence analysis software (Oxford Molecular). ..

    other:

    Article Title: Products & materials.
    Article Snippet: GeneWorks Sequence-Centered Analysis Software is an eight-page brochure on a comprehensive program for DNA and protein sequence analysis for the Macintosh.



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    Schematic overview of the TOMM40-APOE locus. ( a ) Genomic locations of the TOMM40 and APOE genes on chromosome 19 between 50 084 480 and 50 107 480 bp. The regions subjected to primary <t>sequencing</t> and phylogenetic analysis for the exploratory (R1) (23 kb) and confirmatory (R2) (10 kb) studies are highlighted on the genomic map (NCBI Build 36.3). ( b ) Distribution of SNP and insertion/deletion polymorphisms are shown on the gene structure of TOMM40 covered in the region that was subjected to primary sequencing. The region covers exons 6–10 and all associated intronic regions. The variable poly-T repeat (rs10524523) that is significantly associated with LOAD age of onset is depicted with the square labeled ‘P'.
    Sequencing Analysis Program Agent, supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequencing+analysis+program+agent/sequencing+analysis+program+agent/pmc02946560-64-1-9
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    Image Search Results


    Schematic overview of the TOMM40-APOE locus. ( a ) Genomic locations of the TOMM40 and APOE genes on chromosome 19 between 50 084 480 and 50 107 480 bp. The regions subjected to primary sequencing and phylogenetic analysis for the exploratory (R1) (23 kb) and confirmatory (R2) (10 kb) studies are highlighted on the genomic map (NCBI Build 36.3). ( b ) Distribution of SNP and insertion/deletion polymorphisms are shown on the gene structure of TOMM40 covered in the region that was subjected to primary sequencing. The region covers exons 6–10 and all associated intronic regions. The variable poly-T repeat (rs10524523) that is significantly associated with LOAD age of onset is depicted with the square labeled ‘P'.

    Journal: The Pharmacogenomics Journal

    Article Title: A TOMM40 variable-length polymorphism predicts the age of late-onset Alzheimer's disease

    doi: 10.1038/tpj.2009.69

    Figure Lengend Snippet: Schematic overview of the TOMM40-APOE locus. ( a ) Genomic locations of the TOMM40 and APOE genes on chromosome 19 between 50 084 480 and 50 107 480 bp. The regions subjected to primary sequencing and phylogenetic analysis for the exploratory (R1) (23 kb) and confirmatory (R2) (10 kb) studies are highlighted on the genomic map (NCBI Build 36.3). ( b ) Distribution of SNP and insertion/deletion polymorphisms are shown on the gene structure of TOMM40 covered in the region that was subjected to primary sequencing. The region covers exons 6–10 and all associated intronic regions. The variable poly-T repeat (rs10524523) that is significantly associated with LOAD age of onset is depicted with the square labeled ‘P'.

    Article Snippet: A proprietary sequencing analysis program called ‘Agent' (developed by Celera, Alameda, CA, USA) was used to align sequencing reads to the appropriate reference sequence, and produce ‘contigs' associated with each clone.

    Techniques: Sequencing, Labeling