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MacVector inc sequence assembly software version 12.0.5
Sequence Assembly Software Version 12.0.5, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+data+interpretation+tool/sequence+assembly+software/pm24571357-295-9-8
Average 90 stars, based on 1 article reviews
sequence assembly software version 12.0.5 - by Bioz Stars, 2026-10
90/100 stars

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Sequencing:

Article Title: The Fungal Cell-Wall Integrity MAPK Cascade Is Crucial for Hyphal Network Formation and Maintenance of Restrictive Growth of Epichloë festucae in Symbiosis With Lolium perenne
Article Snippet: DNA fragments were sequenced using the dideoxynucleotide chain termination method with the Big-Dye Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems) and separated using an ABI3730 genetic analyzer (Applied BioSystems). .. Sequence data were assembled and analyzed using the MacVector sequence assembly software, version 12.0.5. ..

Article Title: An Epichloë festucae homologue of MOB3, a component of the STRIPAK complex, is required for the establishment of a mutualistic symbiotic interaction with Lolium perenne
Article Snippet: Sequencing reactions were performed using the dideoxynucleotide chain termination method with the Big‐DyeTM Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, California, USA) and separated using an ABI3730 genetic analyser (Applied BioSystems). .. Sequence data were then assembled and analysed using MacVector sequence assembly software, version 12.0.5. ..

Article Title: A homologue of the fungal tetraspanin Pls1 is required for Epichloë festucae expressorium formation and establishment of a mutualistic interaction with Lolium perenne
Article Snippet: Sequencing reactions were performed using the Big‐DyeTM Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, California, USA) and separated using an ABI3730 genetic analyser (Applied Bio Systems). .. Sequence data were assembled and analysed using MacVector sequence assembly software, version 12.0.5. ..

Article Title: Formation of arthroconidia during regeneration and selection of transformed Epichloë festucae protoplasts.
Article Snippet: Transformation is an essential tool for modern fungal research and has played a fundamental role in gaining insight into gene function.. Polyethylene glycol (PEG)-mediated transformation of protoplasts is the most commonly used method for genetic transformation of filamentous fungi.. Selectable marker genes, that confer resistance to antibiotics, are generally incorporated with the DNA of interest, allowing transformed cells to grow through the antibiotic overlay.

Article Title: Disruption of calcineurin catalytic subunit ( cnaA ) in Epichloë festucae induces symbiotic defects and intrahyphal hyphae formation
Article Snippet: DNA fragments were sequenced using the dideoxynucleotide chain termination method with the Big‐Dye Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, CA, USA) and separated using an ABI3730 genetic analyser (Applied BioSystems, MacVector Inc., Apex, NC, USA). .. Sequence data were assembled and analysed using MacVector sequence assembly software, version 12.0.5. ..

Article Title: Analysis of Epichloë festucae small secreted proteins in the interaction with Lolium perenne
Article Snippet: Sequencing reactions were performed using the Big-DyeTM Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, California, USA), and separated using an ABI3730 genetic analyser (Applied Bio Systems). .. Sequence data was assembled and analysed using MacVector sequence assembly software, v14.5.2. ..

Software:

Article Title: The Fungal Cell-Wall Integrity MAPK Cascade Is Crucial for Hyphal Network Formation and Maintenance of Restrictive Growth of Epichloë festucae in Symbiosis With Lolium perenne
Article Snippet: DNA fragments were sequenced using the dideoxynucleotide chain termination method with the Big-Dye Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems) and separated using an ABI3730 genetic analyzer (Applied BioSystems). .. Sequence data were assembled and analyzed using the MacVector sequence assembly software, version 12.0.5. ..

Article Title: An Epichloë festucae homologue of MOB3, a component of the STRIPAK complex, is required for the establishment of a mutualistic symbiotic interaction with Lolium perenne
Article Snippet: Sequencing reactions were performed using the dideoxynucleotide chain termination method with the Big‐DyeTM Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, California, USA) and separated using an ABI3730 genetic analyser (Applied BioSystems). .. Sequence data were then assembled and analysed using MacVector sequence assembly software, version 12.0.5. ..

Article Title: A homologue of the fungal tetraspanin Pls1 is required for Epichloë festucae expressorium formation and establishment of a mutualistic interaction with Lolium perenne
Article Snippet: Sequencing reactions were performed using the Big‐DyeTM Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, California, USA) and separated using an ABI3730 genetic analyser (Applied Bio Systems). .. Sequence data were assembled and analysed using MacVector sequence assembly software, version 12.0.5. ..

Article Title: Formation of arthroconidia during regeneration and selection of transformed Epichloë festucae protoplasts.
Article Snippet: Transformation is an essential tool for modern fungal research and has played a fundamental role in gaining insight into gene function.. Polyethylene glycol (PEG)-mediated transformation of protoplasts is the most commonly used method for genetic transformation of filamentous fungi.. Selectable marker genes, that confer resistance to antibiotics, are generally incorporated with the DNA of interest, allowing transformed cells to grow through the antibiotic overlay.

Article Title: Disruption of calcineurin catalytic subunit ( cnaA ) in Epichloë festucae induces symbiotic defects and intrahyphal hyphae formation
Article Snippet: DNA fragments were sequenced using the dideoxynucleotide chain termination method with the Big‐Dye Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, CA, USA) and separated using an ABI3730 genetic analyser (Applied BioSystems, MacVector Inc., Apex, NC, USA). .. Sequence data were assembled and analysed using MacVector sequence assembly software, version 12.0.5. ..

Article Title: Analysis of Epichloë festucae small secreted proteins in the interaction with Lolium perenne
Article Snippet: Sequencing reactions were performed using the Big-DyeTM Terminator Version 3.1 Ready Reaction Cycle Sequencing Kit (Applied BioSystems, Carlsbad, California, USA), and separated using an ABI3730 genetic analyser (Applied Bio Systems). .. Sequence data was assembled and analysed using MacVector sequence assembly software, v14.5.2. ..

other:

Article Title: Histone H3K9 and H3K27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte-plant symbiosis.
Article Snippet: Sequence data were assembled and analysed using the MacVector sequence assembly software, version 12.0.5.

Article Title: Complex epigenetic regulation of alkaloid biosynthesis and host interaction by heterochromatin protein I in a fungal endophyte-plant symbiosis.
Article Snippet: Accepted Manuscript Complex epigenetic regulation of alkaloid biosynthesis and host interaction by heterochromatin protein I in a fungal endophyte-plant symbiosis Tetsuya Chujo, Yonathan Lukito, Carla J Eaton, Pierre-Yves Dupont, Linda J Johnson, David Winter, Murray P Cox, Barry Scott PII: S1087-1845(19)30047-7 DOI: https://doi.org/10.1016/j.fgb.2019.02.001 Reference: YFGBI 3195 To appear in: Fungal Genetics and Biology Received Date: 12 December 2018 Revised Date: 29 January 2019 Accepted Date: 3 February 2019 Please cite this article as: Chujo, T., Lukito, Y., Eaton, C.J., Dupont, P-Y., Johnson, L.J., Winter, D., Cox, M.P., Scott, B., Complex epigenetic regulation of alkaloid biosynthesis and host interaction by heterochromatin protein I in a fungal endophyte-plant symbiosis, Fungal Genetics and Biology (2019), doi: https://doi.org/10.1016/j.fgb.. 2019.02.001 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.



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Representative block diagram of merozoite surface protein 1 . a The block diagram for msp1 gene is based on conserved amino acid sequences in Plasmodium vivax, P. falciparum and Plasmodium yoelii (inner block). The outer solid and dotted hollow blocks represents conserved and semi-conserved regions based on P. falciparum sequence. The solid block represents ICB with more than 48% identical sequences among three species. The hatched block represents more than 50% identical (conserved) sequences between P. falciparum and P. vivax. Open regions represents less than 45% identity among three species. ICB, interspecies conserved block; CB, Conserved block. b Schematic representation of the primary (NF1, NR1) and secondary (NF2, NR2) oligonucleotide primers used to sequence partial region of the <t>pmmsp1</t> gene
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Representative block diagram of merozoite surface protein 1 . a The block diagram for msp1 gene is based on conserved amino acid sequences in Plasmodium vivax, P. falciparum and Plasmodium yoelii (inner block). The outer solid and dotted hollow blocks represents conserved and semi-conserved regions based on P. falciparum sequence. The solid block represents ICB with more than 48% identical sequences among three species. The hatched block represents more than 50% identical (conserved) sequences between P. falciparum and P. vivax. Open regions represents less than 45% identity among three species. ICB, interspecies conserved block; CB, Conserved block. b Schematic representation of the primary (NF1, NR1) and secondary (NF2, NR2) oligonucleotide primers used to sequence partial region of the <t>pmmsp1</t> gene
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Image Search Results


Representative block diagram of merozoite surface protein 1 . a The block diagram for msp1 gene is based on conserved amino acid sequences in Plasmodium vivax, P. falciparum and Plasmodium yoelii (inner block). The outer solid and dotted hollow blocks represents conserved and semi-conserved regions based on P. falciparum sequence. The solid block represents ICB with more than 48% identical sequences among three species. The hatched block represents more than 50% identical (conserved) sequences between P. falciparum and P. vivax. Open regions represents less than 45% identity among three species. ICB, interspecies conserved block; CB, Conserved block. b Schematic representation of the primary (NF1, NR1) and secondary (NF2, NR2) oligonucleotide primers used to sequence partial region of the pmmsp1 gene

Journal: Malaria Journal

Article Title: Polymorphic markers for identification of parasite population in Plasmodium malariae

doi: 10.1186/s12936-020-3122-2

Figure Lengend Snippet: Representative block diagram of merozoite surface protein 1 . a The block diagram for msp1 gene is based on conserved amino acid sequences in Plasmodium vivax, P. falciparum and Plasmodium yoelii (inner block). The outer solid and dotted hollow blocks represents conserved and semi-conserved regions based on P. falciparum sequence. The solid block represents ICB with more than 48% identical sequences among three species. The hatched block represents more than 50% identical (conserved) sequences between P. falciparum and P. vivax. Open regions represents less than 45% identity among three species. ICB, interspecies conserved block; CB, Conserved block. b Schematic representation of the primary (NF1, NR1) and secondary (NF2, NR2) oligonucleotide primers used to sequence partial region of the pmmsp1 gene

Article Snippet: For pmmsp1 gene, sequence data were interpreted using Bioedit version 7.0.4.

Techniques: Blocking Assay, Sequencing

Primary and secondary primers used for amplification of  pmmsp1 gene  located on chromosome seven using semi-nested PCR

Journal: Malaria Journal

Article Title: Polymorphic markers for identification of parasite population in Plasmodium malariae

doi: 10.1186/s12936-020-3122-2

Figure Lengend Snippet: Primary and secondary primers used for amplification of pmmsp1 gene located on chromosome seven using semi-nested PCR

Article Snippet: For pmmsp1 gene, sequence data were interpreted using Bioedit version 7.0.4.

Techniques: Amplification, Sequencing

Probabilities of the coincidence of the same Plasmodium malariae genotype

Journal: Malaria Journal

Article Title: Polymorphic markers for identification of parasite population in Plasmodium malariae

doi: 10.1186/s12936-020-3122-2

Figure Lengend Snippet: Probabilities of the coincidence of the same Plasmodium malariae genotype

Article Snippet: For pmmsp1 gene, sequence data were interpreted using Bioedit version 7.0.4.

Techniques: Marker

Characteristics of polymorphic microsatellite loci detected in Plasmodium malariae (N = 37)

Journal: Malaria Journal

Article Title: Polymorphic markers for identification of parasite population in Plasmodium malariae

doi: 10.1186/s12936-020-3122-2

Figure Lengend Snippet: Characteristics of polymorphic microsatellite loci detected in Plasmodium malariae (N = 37)

Article Snippet: For pmmsp1 gene, sequence data were interpreted using Bioedit version 7.0.4.

Techniques: