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Unigene sequence assembly program cap3
Sequence Assembly Program Cap3, supplied by Unigene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+assembly+program+cap3/cap3+software/pmc03488838-17-11-1
Average 90 stars, based on 1 article reviews
sequence assembly program cap3 - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Leaf Transcriptome Sequencing for Identifying Genic-SSR Markers and SNP Heterozygosity in Crossbred Mango Variety ‘Amrapali’ ( Mangifera indica L.)
Article Snippet: The assembled TSA contigs of the parents and hybrid were further merged in to a non-redundant set of unigene contigs using CAP3 [ ] with default parameters (overlap length cutoff = 40bp and overlap percent identity cutoff = 90%).

Article Title: Transcriptomic analysis of Casuarina equisetifolia L. in responses to cold stress
Article Snippet: Casuarina species are valued as pioneer trees for coastal shelter forest construction.. However, low temperature stress limits its cultivation expansion, fast growth, and high yield.. To investigate the molecular mechanism by which Casuarina trees cope with cold stress and to provide a comprehensive sequence resource for further molecular genetic research on Casuarina species, we employed RNA-Seq technology to study the genome-wide expression profiles during cold stress in Casuarina equisetifolia L. Four cDNA libraries constructed from mRNAs of control and cold-treated seedlings (at −5 °C for 5 h) were sequenced by using the Illumina sequencing platform.

Article Title: Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism.
Article Snippet: The primary unigene was further assembled to the final unigene with the CAP3 EST software[31].

Construct:

Article Title: Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium
Article Snippet: .. The intra-scaffold gaps were filled and a non-redundant unigene set was constructed from all three assembled datasets using CAP3 software [ ]. ..

Software:

Article Title: Whole-transcriptome analysis of differentially expressed genes in the ray florets and disc florets of Chrysanthemum morifolium
Article Snippet: .. The intra-scaffold gaps were filled and a non-redundant unigene set was constructed from all three assembled datasets using CAP3 software [ ]. ..

Article Title: Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism
Article Snippet: The spliced sequence was called the primary unigene. .. The primary unigene was further assembled to the final unigene with the CAP3 EST software[ ]. ..

Article Title: De novo transcriptomic analysis and development of EST-SSRs for Sorbus pohuashanensis (Hance) Hedl.
Article Snippet: .. The primary unigenes were assembled using CAP3 EST software to produce a final unigene set of 96,213 unigenes with an average length of 700 bp and N50 value of 894. .. The final unigene set contained 19,614 sequences (20.39%), with lengths less than 400 bp; 32,971 unigenes (34.27%), with lengths ranging from 401 to 600 bp; 14,962 unigenes (15.55%), with lengths ranging from 601 to 800 bp;8,582 unigenes (8.91%), with lengths ranging from 801 to 1000 bp; and 20,084 unigenes (20.87%), with lengths above 1000 bp ( ).



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