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Biotechnology Information sequence alignment analysis
Sequence Alignment Analysis, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sequence alignment analysis - by Bioz Stars, 2026-10
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Sequencing:

Article Title: Antimicrobial activity and immunomodulation of four novel cathelicidin genes isolated from the tiger frog Hoplobatrachus rugulosus.
Article Snippet: Cathelicidin is a family of antimicrobial peptides in vertebrates that plays an important role in resistance and immunization against pathogenic microorganisms.. In the present study, the full-length cDNA sequences of four novel cathelicidins (cathelicidin-1 to cathelicidin-4) in the tiger frog Hoplobatrachus rugulosus, encoding 153, 188, 132, and 160 amino acids, respectively, were firstly cloned by rapid amplification of the cDNA ends (RACE) technique.. Sequence comparison and phylogenetic tree analysis indicated that the structures of the four cathelicidins are highly diverse.

Article Title: Molecular analysis of mucopolysaccharidosis type VI in Iranian patients; the influence of founder effect and consanguinity.
Article Snippet: Ali Moradi moradi2008@gmail.com 1 Department of Clinical Biochemistry, School of Medicine, Shahid Sadoughi University of Medical Sciences and Health Services, Yazd, Iran 2 Genetic Research Center, Meybod, Yazd, Iran 3 Reproductive and Genetic Unit, Recurrent Abortion Research Center, Yazd Reproductive Science Institute, Yazd University of Medical Science, Yazd, Iran 4 Children Growth Disorder Research Center, Shahid Sadoughi University of Medical Sciences, Yazd, Iran Abstract Background Mucopolysaccharidosis type VI (MPS VI), also known as Manteaux-Lamy syndrome, is an autosomal recessive lysosomal storage disorder caused by deficiency of the enzyme arylsulfatase B(ARSB).. This syndrome is progressive and affects many tissues and organs, leading to inflammation and scarring.. The classic clinical features of Maroteaux-Lamy syndrome are significant impairment of the osteoarticular system with dysostosis multiplex, short stature and motor dysfunction.

Article Title: A novel AP2/ERF transcription factor, NtERF10, positively regulates plant height in tobacco
Article Snippet: The conserved domain of NtERF10 was searched with the National Center for Biotechnology Information (NCBI) BLAST CD-search using the full-length amino acid sequence of NtERF10 as a query. .. Multiple protein sequence alignment was performed with the National Center for Biotechnology Information (NCBI) Smart BLAST. ..

Article Title: Apoptotic and proinflammatory caspases orchestrate necrotic cell death by cleaving three gasdermin orthologs in the highly adaptable killifish
Article Snippet: .. For sequence alignment, killifish GSDMEa, GSDMEb and GSDMEc sequences were retrieved from the National Center for Biotechnology Information database (www.ncbi.nlm.nih.gov). ..

Article Title: Stenotrophomonas maltophilia uses a c-di-GMP module to sense the mammalian body temperature during infection.
Article Snippet: .. Sequence alignment analysis of the BtsD-BtsK-BtsR system against National Center for Biotechnology Information (NCBI) databases was performed. ..

Article Title: Viral hijacking of host DDX60 promotes Crimean-Congo haemorrhagic fever virus replication via G-quadruplex unwinding
Article Snippet: .. Multiple sequence alignment analysis using 357 CCHFV genomic sequences retrieved from the National Center for Biotechnology Information (NCBI) database showed that M-PQS-1664(+) was more conserved than M-PQS-4576(-) and M-PQS-4715(-) among different CCHFV strains ( and ). ..

Article Title: Identification, Expression, Characteristic Analysis, and Immune Function of Two Akirin Genes in Grass Carp ( Ctenopharyngodon idella )
Article Snippet: .. The predicted sequences of grass carp akirin1 (GEUQ01031657) and akirin2 (GEUQ01062159) were obtained from the transcriptome shotgun assembly database at the National Center for Biotechnology Information through a sequence alignment with zebrafish ( Danio rerio ) akirin1 (NM 001113800.2) and akirin2 (BC097074.1) sequences. .. Total RNA was extracted from the spleen of grass carp, and the first-strand cDNA was synthesized by reverse transcription kit (Takara, Dalian, China).

Real-time Polymerase Chain Reaction:

Article Title: Antimicrobial activity and immunomodulation of four novel cathelicidin genes isolated from the tiger frog Hoplobatrachus rugulosus.
Article Snippet: Cathelicidin is a family of antimicrobial peptides in vertebrates that plays an important role in resistance and immunization against pathogenic microorganisms.. In the present study, the full-length cDNA sequences of four novel cathelicidins (cathelicidin-1 to cathelicidin-4) in the tiger frog Hoplobatrachus rugulosus, encoding 153, 188, 132, and 160 amino acids, respectively, were firstly cloned by rapid amplification of the cDNA ends (RACE) technique.. Sequence comparison and phylogenetic tree analysis indicated that the structures of the four cathelicidins are highly diverse.

other:

Article Title: A novel cascade colorimetric biosensor based on three-way junction-initiated primer exchange reaction for detection of influenza virus
Article Snippet: A novel biosensor based on a three-way junction (3WJ)-induced primer exchange reaction was developed for detection of the H1N1 virus.. The target H1N1 RNA induced formation of a 3WJ.. The subsequent assembly of two DNA probes triggered amplification of downstream strand displacement to copiously generate signal primers to initiate primer exchange reaction to form a long single-stranded sequence containing multiple G quadruplet repeats.

Genomic Sequencing:

Article Title: Viral hijacking of host DDX60 promotes Crimean-Congo haemorrhagic fever virus replication via G-quadruplex unwinding
Article Snippet: .. Multiple sequence alignment analysis using 357 CCHFV genomic sequences retrieved from the National Center for Biotechnology Information (NCBI) database showed that M-PQS-1664(+) was more conserved than M-PQS-4576(-) and M-PQS-4715(-) among different CCHFV strains ( and ). ..



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