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Ridom GmbH seqsphere+ database
Geographic distribution of Italian wild birds analyzed. Geographical mapping of wild birds was obtained with Ridom <t>SeqSphere+</t> v4.1.1 software using the geographical coordinates found from “city” entries. Colors within the mapped circle correspond to the wild bird species reported in the legend.
Seqsphere+ Database, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/seqsphere/seqsphere++database/pmc07238051-197-18-21
Average 90 stars, based on 1 article reviews
seqsphere+ database - by Bioz Stars, 2026-10
90/100 stars

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1) Product Images from "Molecular Characterization and Antimicrobial Susceptibility of C. jejuni Isolates from Italian Wild Bird Populations"

Article Title: Molecular Characterization and Antimicrobial Susceptibility of C. jejuni Isolates from Italian Wild Bird Populations

Journal: Pathogens

doi: 10.3390/pathogens9040304

Geographic distribution of Italian wild birds analyzed. Geographical mapping of wild birds was obtained with Ridom SeqSphere+ v4.1.1 software using the geographical coordinates found from “city” entries. Colors within the mapped circle correspond to the wild bird species reported in the legend.
Figure Legend Snippet: Geographic distribution of Italian wild birds analyzed. Geographical mapping of wild birds was obtained with Ridom SeqSphere+ v4.1.1 software using the geographical coordinates found from “city” entries. Colors within the mapped circle correspond to the wild bird species reported in the legend.

Techniques Used: Software

Related Articles

Generated:

Article Title: A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
Article Snippet: Sequence reads were imported into a SeqSphere+ (Ridom Bioinformatics GmbH, Münster, Germany) database for further processing and assignment to known sequence types (STs).

Article Title: Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry.
Article Snippet: The cgMLST profiles were assigned using a C. jejuni/coli task template with 637 target core genomes available in the Ridom SeqSphere+ database (https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html, accessed on 14 March 2022).

Article Title: Molecular Characterization and Antimicrobial Susceptibility of C. jejuni Isolates from Italian Wild Bird Populations
Article Snippet: The cgMLST profiles were assigned using C.jejuni task template with 949 target core genomes available in the Ridom SeqSphere+ database ( https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html ).

Article Title: Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry
Article Snippet: The cgMLST profiles were assigned using a C. jejuni /coli task template with 637 target core genomes available in the Ridom SeqSphere+ database ( https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html , accessed on 14 March 2022).

Article Title: Assessing mutation accumulation in DNA repair-deficient Listeria monocytogenes : implications for cgMLST cluster thresholds in outbreak analysis
Article Snippet: All isolates are routinely typed using cgMLST analysis based on the method established by Ruppitsch et al. ( ). and are stored in a Ridom SeqSphere+ database, which currently contains over 22,000 sequences (as of September 3 rd , 2024) and is expanded by approximately 3,000 sequences annually.

Article Title: A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
Article Snippet: Results were uploaded to a SeqSphere (Ridom Bioinformatics GmbH; Münster, Germany) database.

Article Title: Isolate-Based Surveillance of Listeria monocytogenes by Whole Genome Sequencing in Austria
Article Snippet: WGS data from 1,960 L. monocytogenes isolates including 36 human and 1924 non-human isolates, recovered from Austrian samples in the year 2017, were available at the SeqSphere + database (Ridom© GmbH, Münster, Germany).

Software:

Article Title: A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
Article Snippet: Sequence reads were imported into a SeqSphere+ (Ridom Bioinformatics GmbH, Münster, Germany) database for further processing and assignment to known sequence types (STs).

Article Title: Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry.
Article Snippet: The cgMLST profiles were assigned using a C. jejuni/coli task template with 637 target core genomes available in the Ridom SeqSphere+ database (https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html, accessed on 14 March 2022).

Article Title: Molecular Characterization and Antimicrobial Susceptibility of C. jejuni Isolates from Italian Wild Bird Populations
Article Snippet: The cgMLST profiles were assigned using C.jejuni task template with 949 target core genomes available in the Ridom SeqSphere+ database ( https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html ).

Article Title: Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry
Article Snippet: The cgMLST profiles were assigned using a C. jejuni /coli task template with 637 target core genomes available in the Ridom SeqSphere+ database ( https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html , accessed on 14 March 2022).

Article Title: Assessing mutation accumulation in DNA repair-deficient Listeria monocytogenes : implications for cgMLST cluster thresholds in outbreak analysis
Article Snippet: All isolates are routinely typed using cgMLST analysis based on the method established by Ruppitsch et al. ( ). and are stored in a Ridom SeqSphere+ database, which currently contains over 22,000 sequences (as of September 3 rd , 2024) and is expanded by approximately 3,000 sequences annually.

Article Title: A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
Article Snippet: Results were uploaded to a SeqSphere (Ridom Bioinformatics GmbH; Münster, Germany) database.

Article Title: Isolate-Based Surveillance of Listeria monocytogenes by Whole Genome Sequencing in Austria
Article Snippet: WGS data from 1,960 L. monocytogenes isolates including 36 human and 1924 non-human isolates, recovered from Austrian samples in the year 2017, were available at the SeqSphere + database (Ridom© GmbH, Münster, Germany).

Sequencing:

Article Title: A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
Article Snippet: Sequence reads were imported into a SeqSphere+ (Ridom Bioinformatics GmbH, Münster, Germany) database for further processing and assignment to known sequence types (STs).

Article Title: Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry.
Article Snippet: The cgMLST profiles were assigned using a C. jejuni/coli task template with 637 target core genomes available in the Ridom SeqSphere+ database (https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html, accessed on 14 March 2022).

Article Title: Molecular Characterization and Antimicrobial Susceptibility of C. jejuni Isolates from Italian Wild Bird Populations
Article Snippet: The cgMLST profiles were assigned using C.jejuni task template with 949 target core genomes available in the Ridom SeqSphere+ database ( https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html ).

Article Title: Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry
Article Snippet: The cgMLST profiles were assigned using a C. jejuni /coli task template with 637 target core genomes available in the Ridom SeqSphere+ database ( https://www.ridom.de/seqsphere/u/Task_Template_Sphere.html , accessed on 14 March 2022).

Article Title: Assessing mutation accumulation in DNA repair-deficient Listeria monocytogenes : implications for cgMLST cluster thresholds in outbreak analysis
Article Snippet: All isolates are routinely typed using cgMLST analysis based on the method established by Ruppitsch et al. ( ). and are stored in a Ridom SeqSphere+ database, which currently contains over 22,000 sequences (as of September 3 rd , 2024) and is expanded by approximately 3,000 sequences annually.

Article Title: A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
Article Snippet: Results were uploaded to a SeqSphere (Ridom Bioinformatics GmbH; Münster, Germany) database.

Article Title: Isolate-Based Surveillance of Listeria monocytogenes by Whole Genome Sequencing in Austria
Article Snippet: WGS data from 1,960 L. monocytogenes isolates including 36 human and 1924 non-human isolates, recovered from Austrian samples in the year 2017, were available at the SeqSphere + database (Ridom© GmbH, Münster, Germany).



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Image Search Results


Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

Journal: BMC Microbiology

Article Title: Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering

doi: 10.1186/s12866-025-04152-8

Figure Lengend Snippet: Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

Article Snippet: Core-genome MLST (cgMLST) analysis for 286 R. equi genomes was performed in Ridom Seqsphere+ (v9.0.1; Ridom GmbH, Münster, Germany).

Techniques: Construct, Generated, Isolation, Plasmid Preparation