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gene signature enrichment analysis (gsea) on a preranked list of log2-transformed relative gene expression values  (Broad Institute Inc)

 
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    Broad Institute Inc gene signature enrichment analysis (gsea) on a preranked list of log2-transformed relative gene expression values
    Gene Signature Enrichment Analysis (Gsea) On A Preranked List Of Log2 Transformed Relative Gene Expression Values, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rna+sequency+data+processing/rna+sequencing+data/pmc07269128-87-12-17
    Average 90 stars, based on 1 article reviews
    gene signature enrichment analysis (gsea) on a preranked list of log2-transformed relative gene expression values - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Identification of genes associated with testicular germ cell tumor susceptibility through a transcriptome-wide association study
    Article Snippet: RNA sequencing (RNA-seq) data from 150 TGCT samples previously published by TCGA network in Shen et al. were obtained from the Broad Institute FireBrowse portal ( http://firebrowse.org/?cohort=TGCT&download_dialog=true ).

    Article Title: Whole stromal fibroblast signature is linked to specific chemokine and immune infiltration patterns and to improved survival in NSCLC
    Article Snippet: Gene expression profiles (RNA sequencing V2 data) and corresponding clinical information of 515 patients with primary lung adenocarcinoma and 58 adjacent normal lung tissue of The Cancer Genome Atlas cohort (LUAD-TCGA) were retrieved via firebrowse.org (courtesy Broad Institute of MIT & Harvard).

    Article Title: A deep profile of gene expression across 18 human cancers
    Article Snippet: We downloaded TCGA RSEM normalized log2 transformed RNA-Seq expression matrices for all cancer types from Broad Institute data version 2016_01_28 (https://gdac.broadinstitute.org/) and generated by TCGA Research Network (https://www.cancer.gov/tcga/).

    Article Title: Tumor-derived GDF-15 blocks LFA-1 dependent T cell recruitment and suppresses responses to anti-PD-1 treatment
    Article Snippet: Gene expression profiles (RNA sequencing V2 data) and clinical information for 33 different cancer type cohorts with additional 3 combined projects of The Cancer Genome Atlas (TCGA) were retrieved via firebrowse.org (courtesy Broad Institute of MIT & Harvard).

    Sequencing:

    Article Title: Clinical significance of ribosomal protein S15 expression in patients with colorectal cancer liver metastases
    Article Snippet: .. RNA sequence data and corresponding clinical information on colon adenocarcinoma cases were obtained from TCGA via the Broad Institute's Firehose ( http://firebrowse.org/?cohort=COAD , RNA‐seq, Illumina). .. This resource provides RNA‐seq data generated using Illumina technology, as previously described.

    Article Title: Clinical significance of ribosomal protein S15 expression in patients with colorectal cancer liver metastases.
    Article Snippet: .. RNA sequence data and corresponding clinical information on colon adenocarcinoma cases were obtained from TCGA via the Broad Institute's Firehose (http:// fireb rowse. org/? cohor t= COAD, RNA- seq, Illumina). .. This resource provides RNA- seq data generated using Illumina technology, as previously described.10 Clinical information was available for 57 of the 457 COAD cases with mRNA expression profiles.

    RNA Sequencing:

    Article Title: Clinical significance of ribosomal protein S15 expression in patients with colorectal cancer liver metastases
    Article Snippet: .. RNA sequence data and corresponding clinical information on colon adenocarcinoma cases were obtained from TCGA via the Broad Institute's Firehose ( http://firebrowse.org/?cohort=COAD , RNA‐seq, Illumina). .. This resource provides RNA‐seq data generated using Illumina technology, as previously described.

    Article Title: Clinical significance of ribosomal protein S15 expression in patients with colorectal cancer liver metastases.
    Article Snippet: .. RNA sequence data and corresponding clinical information on colon adenocarcinoma cases were obtained from TCGA via the Broad Institute's Firehose (http:// fireb rowse. org/? cohor t= COAD, RNA- seq, Illumina). .. This resource provides RNA- seq data generated using Illumina technology, as previously described.10 Clinical information was available for 57 of the 457 COAD cases with mRNA expression profiles.

    Microarray:

    Article Title: A deep profile of gene expression across 18 human cancers
    Article Snippet: .. We downloaded TCGA log2 LOWESS normalized microarray expression matrices for all the available cancer types from Broad Institute data version 2016_01_28 (https://gdac.broadinstitute.org/) generated by the TCGA Research Network (https://www.cancer.gov/tcga/) (see Supplementary File 1 for the mapping of cancer types and the number of samples for which we have matching expression measurements). ..

    Expressing:

    Article Title: A deep profile of gene expression across 18 human cancers
    Article Snippet: .. We downloaded TCGA log2 LOWESS normalized microarray expression matrices for all the available cancer types from Broad Institute data version 2016_01_28 (https://gdac.broadinstitute.org/) generated by the TCGA Research Network (https://www.cancer.gov/tcga/) (see Supplementary File 1 for the mapping of cancer types and the number of samples for which we have matching expression measurements). ..

    Generated:

    Article Title: A deep profile of gene expression across 18 human cancers
    Article Snippet: .. We downloaded TCGA log2 LOWESS normalized microarray expression matrices for all the available cancer types from Broad Institute data version 2016_01_28 (https://gdac.broadinstitute.org/) generated by the TCGA Research Network (https://www.cancer.gov/tcga/) (see Supplementary File 1 for the mapping of cancer types and the number of samples for which we have matching expression measurements). ..



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