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Partek rma algorithm
Rma Algorithm, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rma+algorithm/rma+algorithm/pm39602834-113-8-0
Average 90 stars, based on 1 article reviews
rma algorithm - by Bioz Stars, 2026-11
90/100 stars

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other:

Article Title: Transcriptome analysis of islets from diabetes‐resistant and diabetes‐prone obese mice reveals novel gene regulatory networks involved in beta‐cell compensation and failure
Article Snippet: © 2021 Federation of American Societies for Experimental Biology Jeng Yie Chan, Mohammed Bensellam, and Ruby C. Y. Lin contributed equally to this work.. Abbreviations: AA, amino acid; DE, differentially expressed; ELISA, enzymelinked immunosorbent assay; ER, endoplasmic reticulum; FA, fatty acid; FDR, false discovery rate; GPCR, G proteincoupled receptor; GPL, glycerophospholipid; GO, gene ontology; GSEA, gene set enrichment analysis; GSIS, glucosestimulated insulin secretion; HCL, hierarchical clustering analysis; HTRF, homogeneous timeresolved fluorescence; KEGG, kyoto encyclopedia of genes and genomes; KO, knockout; MHC, major histocompatibility complex; MODY, maturityonset diabetes of the young; PCA, principal component analysis; PDI, protein disulfide isomerase; ROS, reactive oxygen species; siRNA, smallinterfering RNA; SLR, signal log ratio; SREBP, sterol regulatory elementbinding protein; T2D, type 2 diabetes; TG, triglyceride; UPR, unfolded protein response; ZDF, Zucker diabetic fatty.. 1Garvan Institute of Medical Research, Sydney, NSW, Australia 2School of Medical Sciences, University of New South Wales, Sydney, NSW, Australia 3Pôle D'endocrinologie, Diabète et Nutrition, Institut de Recherche Expérimentale et Clinique, Université Catholique de Louvain, Brussels, Belgium 4Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Sydney, NSW, Australia 5Sydney Medical School, The University of Sydney, Sydney, NSW, Australia

Article Title: NF-κB-miR-155 axis activation mediates ovulation-induced oncogenic effects in fallopian tube epithelium.
Article Snippet: The probe sets contained in the Affymetrix miRarray oligonucleotide arrays were analyzed using RMA algorithm (PARTEK).

Article Title: A neuronal PI(3,4,5)P 3 -dependent program of oligodendrocyte precursor recruitment and myelination.
Article Snippet: Semithin (0.5 mm) and ultrathin (50–60 nm) sections were cut using a microtome (RM 2155, Leica Microsystems, Wetzlar, Germany) with a diamond knife (Histo HI 4317, Diatome, Biel, Switzerland).

Software:

Article Title: Neutrophil extracellular traps impair regeneration
Article Snippet: RNA was submitted to the JHMI Deep Sequencing & Microarray core facility and profiled using the Affymetrix ClariomTM S mouse array platform, according to the manufacturer’s protocols. .. Gene chips were scanned, generating CEL pixel intensity files, which were processed and analyzed using Partek ® Genomics SuiteTM software, and the Robust Multichip Analysis (RMA) algorithm was used for normalization. ..

Article Title: Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System
Article Snippet: .. The samples were hybridized to GeneChip Mouse Gene 1.0 ST arrays at UCL Genomics and processed using the rma algorithm using the Partek software (Partek Inc., St. Louis, MO). ..

Article Title: Neutrophil extracellular traps impair regeneration
Article Snippet: RNA was submitted to the JHMI Deep Sequencing & Microarray core facility and profiled using the Affymetrix ClariomTM S mouse array platform, according to the manufacturer's protocols. .. Gene chips were scanned, generating CEL pixel intensity files, which were processed and analysed using Partek ® Genomics SuiteTM software, and the Robust Multichip Analysis (RMA) algorithm was used for normalization. ..

Article Title: A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets
Article Snippet: .. All data were implemented in Affymetrix U133A and U133 Plus 2.0 platform, and the raw data (.CEL) were normalized by RMA algorithm using statistic software Partek ® Genomics SuiteTM (Partek Inc., St. Louis, MO, USA). .. Affymetrix probe set IDs were converted to UniProt IDs before mapping onto the GO database.

Microarray:

Article Title: Lower level of miR-34a leads to placenta accreta spectrum by promoting the proliferation, migration of trophoblast villous epithelial cells and enhanced the angiogenesis of vascular endothelial cells.
Article Snippet: Introduction: The overall prevalence of placenta accreta spectrum (PAS) is approximately 0.17 %, but it accounts for 7 % of maternal mortality and is associated with intraoperative and postoperative morbidity.. The pathogenesis mechanisms of PAS include an imbalance between decidualization and trophoblast invasion.. The aim of this study is to identify the pathogenesis roles of miR-34a in PAS.



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