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rma (robust multi-array analysis) algorithm  (Partek)

 
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    Partek rma (robust multi-array analysis) algorithm
    Rma (Robust Multi Array Analysis) Algorithm, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rma+(robust+multi-array+analysis)+algorithm/robust+multiarray+average++rma++algorithm/pmc04150815-372-7-13
    Average 90 stars, based on 1 article reviews
    rma (robust multi-array analysis) algorithm - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: TATA box-binding protein-related factor 3 drives the mesendoderm specification of human embryonic stem cells by globally interacting with the TATA box of key mesendodermal genes.
    Article Snippet: All chips were normalized using the Robust Multi-array Average method implemented in Partek Genomics Suite 6.5 software.

    Article Title: Gingival Transcriptome of Innate Antimicrobial Factors and the Oral Microbiome With Aging and Periodontitis.
    Article Snippet: The expression intensities across the samples were estimated using the Robust Multi-array Average (RMA) algorithm with probe-level quintile normalization, as implemented in the Partek Genomics Suite software version 6.6 (Partek, St. Louis, MO).

    Article Title: Functional Characterization of 15 Novel Dense Granule Proteins in Toxoplasma gondii Using the CRISPR-Cas9 System
    Article Snippet: The transcriptional patterns of the main archetypal lineages (genotypes I, II, and III), cell cycle expression profiles , different developmental stages (oocysts, tachyzoites, and bradyzoites) , and during bradyzoite differentiation ( ) were analyzed using the Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St. Louis, MO, USA).

    Article Title: Functional Characterization of 17 Protein Serine/Threonine Phosphatases in Toxoplasma gondii Using CRISPR-Cas9 System
    Article Snippet: PSP gene expression analysis was performed using Robust Multiarray Average (RMA) algorithm of the Partek Genomics Suite package (Partek, Inc., St Louis, MO, United States).

    Article Title: Periodontitis-resistant and -susceptible matriline regulation of gingival transcriptome in nonhuman primates.
    Article Snippet: Periodontitis is a persistent infection and inflammatory disease resulting from a dysbiosis of the microbiome at specific subgingival sulcal sites.. This is coupled with a dysregulated immunoinflammatory response resulting in soft and hard tissue destructive events.1– 4 While the disease, previously described as juvenile or aggressive periodontitis had been linked to a particular oral pathogen, Aggregatibacter actinomycetemcomitans, familial transmission of disease, and host genetic alterations contributing to altered neutrophil biology,5 these types of data for the most prominent disease, chronic adult periodontitis, are less clear.. Historical data from twin Received: 4 May 2023 | Revised: 20 June 2023 | Accepted: 7 July 2023 DOI: 10.1111/jre.13162

    Article Title: Gingival tissue autophagy pathway gene expression profiles in periodontitis and aging.
    Article Snippet: © 2020 John Wiley & Sons A/S.. Published by John Wiley & Sons Ltd 1Department of Biomedical Sciences, School of Dental Medicine, University of Nevada Las Vegas, NV, USA 2Center for Oral Health Research, University of Kentucky, Lexington, KY, USA 3Department of Periodontology, College of Dentistry, University of Kentucky, Lexington, KY, USA 4Department of Statistics, College of Arts and Sciences, University of Kentucky, Lexington, KY, USA 5School of Dental Medicine, University of Puerto Rico, San Juan, PR, USA 6Caribbean Primate Research Center, University of Puerto Rico, Toa Baja, PR, USA

    Microarray:

    Article Title: Epithelial TGFβ engages growth-factor signalling to circumvent apoptosis and drive intestinal tumourigenesis with aggressive features.
    Article Snippet: The annotation file ’Xcel Annotations, CSV format, Release 36’, (http://www.affymetrix.com/ support/technical/byproduct.affx?product=xcel) was downloaded from Affymetrix. .. Raw microarray.CEL file data were normalised using Robust Multi-array Average (RMA) in Partek Genomics Suite software (v6.6; Partek Inc.). ..

    Software:

    Article Title: Epithelial TGFβ engages growth-factor signalling to circumvent apoptosis and drive intestinal tumourigenesis with aggressive features.
    Article Snippet: The annotation file ’Xcel Annotations, CSV format, Release 36’, (http://www.affymetrix.com/ support/technical/byproduct.affx?product=xcel) was downloaded from Affymetrix. .. Raw microarray.CEL file data were normalised using Robust Multi-array Average (RMA) in Partek Genomics Suite software (v6.6; Partek Inc.). ..

    Article Title: Gingival tissue antibody gene utilization in aging and periodontitis.
    Article Snippet: Funding information This work was supported by National Institute of Health grant P20GM103538.. We express our gratitude to the Caribbean Primate Research Center (CPRC) supported by grant P40RR03640, and the Center for Oral Health Research in the College of Dentistry at the University of Kentucky.. Abstract Objective: This study used a nonhuman primate model of ligatureinduced periodontitis to document the characteristics of immunoglobulin (Ig) gene usage in gingival tissues with disease and affected by age.

    Expressing:

    Article Title: Gingival tissue antibody gene utilization in aging and periodontitis.
    Article Snippet: Funding information This work was supported by National Institute of Health grant P20GM103538.. We express our gratitude to the Caribbean Primate Research Center (CPRC) supported by grant P40RR03640, and the Center for Oral Health Research in the College of Dentistry at the University of Kentucky.. Abstract Objective: This study used a nonhuman primate model of ligatureinduced periodontitis to document the characteristics of immunoglobulin (Ig) gene usage in gingival tissues with disease and affected by age.



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