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ripseq sanger poly software service  (Pathogenomix Inc)

 
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    Pathogenomix Inc ripseq sanger poly software service
    Ripseq Sanger Poly Software Service, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ripseq+software/ripseq+sanger+poly+software+service/pm34863914-93-9-14
    Average 90 stars, based on 1 article reviews
    ripseq sanger poly software service - by Bioz Stars, 2026-11
    90/100 stars

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    Software:

    Article Title: Laboratory diagnosis of bacterial meningitis by direct detection, serotyping and Next Generation Sequencing: How 10 years of testing in New York State has evolved to improve laboratory diagnosis and public health.
    Article Snippet: Since 2005, the Wadsworth Center (WC) has provided molecular testing on cerebrospinal fluid (CSF) and whole blood specimens in close collaboration with epidemiologists in New York State and New York City.. In this study, we analyzed 10 years of data to demonstrate the significant value of utilizing molecular methods to assess patient specimens for etiologic agents of bacterial meningitis.. A comprehensive molecular testing algorithm to detect and serotype/serogroup bacterial agents known to cause bacterial meningitis (Neisseria meningitidis, Streptococcus pneumoniae, Haemophilus influenzae and Streptococcus agalactiae) has evolved, and retrospective specimen testing has been essential for each improvement.



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    (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using <t>the</t> <t>Pathogenomix</t> <t>Ripseq</t> software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.
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    (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using the Pathogenomix Ripseq software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.

    Journal: Access Microbiology

    Article Title: Bacteraemia with Moryella indoligenes and Fastidiosipila sanguinis : a case report

    doi: 10.1099/acmi.0.000108

    Figure Lengend Snippet: (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using the Pathogenomix Ripseq software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.

    Article Snippet: Using the Pathogenomix Ripseq software and database the best hits were F. sanguinis with a score of 100, and a Lachnospiraceae species with a score of 99.5 [ ].

    Techniques: Sequencing, Software