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human breast cancer mcf7  (ATCC)


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    ATCC human breast cancer mcf7
    Effects of hypoxia on cell markers, morphology, and migration (A) Expression in breast cancer <t>MCF7</t> and MDA-MB-231 cells of E-cadherin (epithelial marker), fibronectin (epithelial marker), HIF-1α (hypoxia marker), β-catenin, and GLUT1. Cells were cultured at 37°C in 5% CO 2 atmosphere for normoxic treatment, and in 1% O 2 / 5% CO 2 / 94% N 2 atmosphere for hypoxic treatment. Cells were harvested, lysed in T-PER Reagent, and protein content was determined by BCA assay. Western blotting was performed as described in M&M. (B) Morphological changes under normoxic and hypoxic conditions. Cells (2 × 10 5 per well) were grown in 6-well plates for 24 h under the two conditions. Photos were taken by phase-contrast microscopy at 200× magnification. (C) Cell migration assessed by wound assay. Cell monolayers under the two conditions were scratched with pipette tip. Cells were washed with ice-cold 1× PBS and cultured in serum-free medium. Pictures of wounds were taken at 0 and 24 h by phase-contrast microscopy (100× magnification).
    Human Breast Cancer Mcf7, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 35160 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Images

    1) Product Images from "Bisecting N-Acetylglucosamine Structures Inhibit Hypoxia-Induced Epithelial-Mesenchymal Transition in Breast Cancer Cells"

    Article Title: Bisecting N-Acetylglucosamine Structures Inhibit Hypoxia-Induced Epithelial-Mesenchymal Transition in Breast Cancer Cells

    Journal: Frontiers in Physiology

    doi: 10.3389/fphys.2018.00210

    Effects of hypoxia on cell markers, morphology, and migration (A) Expression in breast cancer MCF7 and MDA-MB-231 cells of E-cadherin (epithelial marker), fibronectin (epithelial marker), HIF-1α (hypoxia marker), β-catenin, and GLUT1. Cells were cultured at 37°C in 5% CO 2 atmosphere for normoxic treatment, and in 1% O 2 / 5% CO 2 / 94% N 2 atmosphere for hypoxic treatment. Cells were harvested, lysed in T-PER Reagent, and protein content was determined by BCA assay. Western blotting was performed as described in M&M. (B) Morphological changes under normoxic and hypoxic conditions. Cells (2 × 10 5 per well) were grown in 6-well plates for 24 h under the two conditions. Photos were taken by phase-contrast microscopy at 200× magnification. (C) Cell migration assessed by wound assay. Cell monolayers under the two conditions were scratched with pipette tip. Cells were washed with ice-cold 1× PBS and cultured in serum-free medium. Pictures of wounds were taken at 0 and 24 h by phase-contrast microscopy (100× magnification).
    Figure Legend Snippet: Effects of hypoxia on cell markers, morphology, and migration (A) Expression in breast cancer MCF7 and MDA-MB-231 cells of E-cadherin (epithelial marker), fibronectin (epithelial marker), HIF-1α (hypoxia marker), β-catenin, and GLUT1. Cells were cultured at 37°C in 5% CO 2 atmosphere for normoxic treatment, and in 1% O 2 / 5% CO 2 / 94% N 2 atmosphere for hypoxic treatment. Cells were harvested, lysed in T-PER Reagent, and protein content was determined by BCA assay. Western blotting was performed as described in M&M. (B) Morphological changes under normoxic and hypoxic conditions. Cells (2 × 10 5 per well) were grown in 6-well plates for 24 h under the two conditions. Photos were taken by phase-contrast microscopy at 200× magnification. (C) Cell migration assessed by wound assay. Cell monolayers under the two conditions were scratched with pipette tip. Cells were washed with ice-cold 1× PBS and cultured in serum-free medium. Pictures of wounds were taken at 0 and 24 h by phase-contrast microscopy (100× magnification).

    Techniques Used: Migration, Expressing, Marker, Cell Culture, BIA-KA, Western Blot, Microscopy, Transferring

    MALDI-TOF-MS spectra of N-glycans from MCF7 cells MCF7 cells were cultured in 10-cm dishes under normoxic and hypoxic conditions, and N-glycans were separated and desalted as described in M&M. Lyophilized N-glycans were dissolved in MW, and an aliquot of mixture with DHB solution was spotted on MTP AnchorChip sample target and air-dried. MALTI-TOF-MS was performed in positive-ion mode. Experiments were performed in biological triplicate, and representative N-glycan spectra are shown. Peaks (signal-to-noise ratio > 5) were selected for relative proportion analysis. Detailed structures were analyzed using the GlycoWorkbench program. Proposed structures are indicated by m/z value.
    Figure Legend Snippet: MALDI-TOF-MS spectra of N-glycans from MCF7 cells MCF7 cells were cultured in 10-cm dishes under normoxic and hypoxic conditions, and N-glycans were separated and desalted as described in M&M. Lyophilized N-glycans were dissolved in MW, and an aliquot of mixture with DHB solution was spotted on MTP AnchorChip sample target and air-dried. MALTI-TOF-MS was performed in positive-ion mode. Experiments were performed in biological triplicate, and representative N-glycan spectra are shown. Peaks (signal-to-noise ratio > 5) were selected for relative proportion analysis. Detailed structures were analyzed using the GlycoWorkbench program. Proposed structures are indicated by m/z value.

    Techniques Used: Cell Culture, Glycoproteomics

    Relative proportions of various types of N-glycans in  MCF7  and MDA-MB-231 cells under normoxia and hypoxia.
    Figure Legend Snippet: Relative proportions of various types of N-glycans in MCF7 and MDA-MB-231 cells under normoxia and hypoxia.

    Techniques Used:

    Variation of fine glycan structures detected by lectin microarray analysis (A) Variation of levels of glycans from MCF7 (upper) and MDA-MB-231 (lower) cells, detected by 37 lectins, is presented as a heatmap. Lectin microarray analysis was performed as described as M&M. Red: fluorescence signal activation. Green: signal inhibition. Black: missing data. (B) Altered glycan levels evaluated by lectin histochemistry. Four lectins (Con A, MAL-I, LCA, PHA-E) were applied, and lectin histochemistry was performed as described in M&M. Signals are shown from merge images of Cy3-conjugated lectins and DAPI staining of nuclei in MCF7 (left) and MDA-MB-231 (right) under normoxic and hypoxic conditions (60× magnification). (C) Expression in MCF7 and MDA-MB-231 cells of HIF-1α, MGAT3, and tubulin.
    Figure Legend Snippet: Variation of fine glycan structures detected by lectin microarray analysis (A) Variation of levels of glycans from MCF7 (upper) and MDA-MB-231 (lower) cells, detected by 37 lectins, is presented as a heatmap. Lectin microarray analysis was performed as described as M&M. Red: fluorescence signal activation. Green: signal inhibition. Black: missing data. (B) Altered glycan levels evaluated by lectin histochemistry. Four lectins (Con A, MAL-I, LCA, PHA-E) were applied, and lectin histochemistry was performed as described in M&M. Signals are shown from merge images of Cy3-conjugated lectins and DAPI staining of nuclei in MCF7 (left) and MDA-MB-231 (right) under normoxic and hypoxic conditions (60× magnification). (C) Expression in MCF7 and MDA-MB-231 cells of HIF-1α, MGAT3, and tubulin.

    Techniques Used: Glycoproteomics, Microarray, Fluorescence, Activation Assay, Inhibition, Staining, Expressing

    Differential glycopatterns in normoxia- vs. hypoxia-treated  MCF7  cells revealed by lectin microarray analysis.
    Figure Legend Snippet: Differential glycopatterns in normoxia- vs. hypoxia-treated MCF7 cells revealed by lectin microarray analysis.

    Techniques Used: Microarray

    MGAT3 overexpression suppresses hypoxia-induced EMT in MCF7 cells (A) MGAT3 expression in mock- and MGAT3-transfected MCF7 cells. Cells were stably transduced with a GFP-marked lentivirus carrying mock gene or MGAT3 gene, harvested, and lysed in T-PER Reagent. Western blotting was performed as described in M&M using anti-MGAT3 and anti-GFP antibody. (B) Levels of bisecting GlcNAc structures in mock- and MGAT3-transfectants. Whole cell lysates of the two transfectants were subjected to PHA-E lectin blotting as described in M&M. (C) Proliferation of transfectant cells. The two transfectants were cultured for 24, 36, 48, 60, and 72 h, and proliferation was assessed by MTS assay. (E) Colony formation ability. The two transfectants (2500 cells each) were cultured in 6-cm dishes for 1–2 week, fixed, stained with crystal violet solution, and photographed. Acetic acid was added to dissolve crystal violet, and OD 595 was determined (D) . * p < 0.05; *** p < 0.001. (F) Cell migration. Migration assays of the two transfectants under normoxic and hypoxic conditions were performed as described in M&M, and relative migration rate was shown (H) . * p < 0.05. (G) Expression of HIF-1α, MGAT3, AKT, p-AKT, E-cadherin, fibronectin, and tubulin in the two transfectants under normoxic and hypoxic conditions. Cells were cultured as described in Figure , harvested, and lysed in T-PER Reagent. Protein content was determined by BCA assay. Western blotting was performed as described in M&M.
    Figure Legend Snippet: MGAT3 overexpression suppresses hypoxia-induced EMT in MCF7 cells (A) MGAT3 expression in mock- and MGAT3-transfected MCF7 cells. Cells were stably transduced with a GFP-marked lentivirus carrying mock gene or MGAT3 gene, harvested, and lysed in T-PER Reagent. Western blotting was performed as described in M&M using anti-MGAT3 and anti-GFP antibody. (B) Levels of bisecting GlcNAc structures in mock- and MGAT3-transfectants. Whole cell lysates of the two transfectants were subjected to PHA-E lectin blotting as described in M&M. (C) Proliferation of transfectant cells. The two transfectants were cultured for 24, 36, 48, 60, and 72 h, and proliferation was assessed by MTS assay. (E) Colony formation ability. The two transfectants (2500 cells each) were cultured in 6-cm dishes for 1–2 week, fixed, stained with crystal violet solution, and photographed. Acetic acid was added to dissolve crystal violet, and OD 595 was determined (D) . * p < 0.05; *** p < 0.001. (F) Cell migration. Migration assays of the two transfectants under normoxic and hypoxic conditions were performed as described in M&M, and relative migration rate was shown (H) . * p < 0.05. (G) Expression of HIF-1α, MGAT3, AKT, p-AKT, E-cadherin, fibronectin, and tubulin in the two transfectants under normoxic and hypoxic conditions. Cells were cultured as described in Figure , harvested, and lysed in T-PER Reagent. Protein content was determined by BCA assay. Western blotting was performed as described in M&M.

    Techniques Used: Over Expression, Expressing, Transfection, Stable Transfection, Transduction, Western Blot, Cell Culture, MTS Assay, Staining, Migration, BIA-KA

    MGAT3 knockdown promotes hypoxia-induced EMT in MCF7 cells (A) MGAT3 expression in mock- and MGAT3-shRNA-transfected MCF7 cells. Cells were stably transduced with lentivirus carrying anti-MGAT3 shRNAs (MCF7/shMGAT3-1/2) or shNC (MCF7/mock), harvested, and lysed in T-PER Reagent. Western blotting was performed as described in M&M. (B) Cell proliferation. The two transfectants were cultured for 24, 36, 48, 60, and 72 h, and proliferation was assessed by MTS assay. (C) Cell migration. Migration assays of the two transfectants under normoxic and hypoxic conditions were performed as described in M&M, and relative migration rate was shown (E) . * p < 0.05; ** p < 0.01. (D) Expression of HIF-1α, MGAT3, AKT, p-AKT, E-cadherin, fibronectin, β-catenin, and tubulin in the two transfectants under normoxic and hypoxic conditions. Cells were cultured as described in Figure , harvested, and lysed in T-PER Reagent. Protein content was determined by BCA assay. Western blotting was performed as described in M&M.
    Figure Legend Snippet: MGAT3 knockdown promotes hypoxia-induced EMT in MCF7 cells (A) MGAT3 expression in mock- and MGAT3-shRNA-transfected MCF7 cells. Cells were stably transduced with lentivirus carrying anti-MGAT3 shRNAs (MCF7/shMGAT3-1/2) or shNC (MCF7/mock), harvested, and lysed in T-PER Reagent. Western blotting was performed as described in M&M. (B) Cell proliferation. The two transfectants were cultured for 24, 36, 48, 60, and 72 h, and proliferation was assessed by MTS assay. (C) Cell migration. Migration assays of the two transfectants under normoxic and hypoxic conditions were performed as described in M&M, and relative migration rate was shown (E) . * p < 0.05; ** p < 0.01. (D) Expression of HIF-1α, MGAT3, AKT, p-AKT, E-cadherin, fibronectin, β-catenin, and tubulin in the two transfectants under normoxic and hypoxic conditions. Cells were cultured as described in Figure , harvested, and lysed in T-PER Reagent. Protein content was determined by BCA assay. Western blotting was performed as described in M&M.

    Techniques Used: Knockdown, Expressing, shRNA, Transfection, Stable Transfection, Transduction, Western Blot, Cell Culture, MTS Assay, Migration, BIA-KA

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    Cell Culture:

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    Modification:

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    Flow Cytometry:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
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    Imaging:

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    BIA-KA:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
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    Cell-Signaling:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    SDS Page:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Western Blot:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Tissue:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Software:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Analysis:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..



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    Fig. 9. Reduced emerin expression at the nuclear periphery correlates with breast cancer invasiveness in patients. (A) Representative tissue microarray staining of emerin in 159 patients using emerin polyclonal antibodies (Proteintech, cat# 10351-1-AP) or secondary alone (Vector Lab, cat#: MP-7451). Nuclei are blue, emerin is brown, and arrows denote emerin staining in certain images for reference. As severity of cases increases, there is a visible reduction in emerin expression at the nuclear envelope and more deformed nuclei are present. (B) Quantification of emerin staining on IHC-stained patient samples using 0–3, with 0 having no staining at the nuclear periphery and 3 having complete, dark rim staining. N = 159 total samples, *P < 0.05 compared to normal tissue, one-way ANOVA and Dunnett’s test. Error bars represent standard deviation. (C) Representative tissue microarray staining of emerin in 183 patients using emerin monoclonal antibodies (Leica, NCL-Emerin) or secondary alone (Vector Lab, cat#: MP-7452) using the same samples used in A. Nuclei are blue and emerin is brown. As aggressiveness of cases increases, there is a visible reduction in emerin expression and more deformed nuclei are present. (D) Quantification of emerin staining using the 0 to 3 grading system. N = 183 total samples #P < 0.02 compared to all non-cancerous tissue, *P < 0.0062 compared to both normal and benign tissue, one-way ANOVA and Dunnett’s test. Error bars represent standard deviation.

    Journal: Scientific reports

    Article Title: Emerin deficiency drives MCF7 cells to an invasive phenotype.

    doi: 10.1038/s41598-024-70752-5

    Figure Lengend Snippet: Fig. 9. Reduced emerin expression at the nuclear periphery correlates with breast cancer invasiveness in patients. (A) Representative tissue microarray staining of emerin in 159 patients using emerin polyclonal antibodies (Proteintech, cat# 10351-1-AP) or secondary alone (Vector Lab, cat#: MP-7451). Nuclei are blue, emerin is brown, and arrows denote emerin staining in certain images for reference. As severity of cases increases, there is a visible reduction in emerin expression at the nuclear envelope and more deformed nuclei are present. (B) Quantification of emerin staining on IHC-stained patient samples using 0–3, with 0 having no staining at the nuclear periphery and 3 having complete, dark rim staining. N = 159 total samples, *P < 0.05 compared to normal tissue, one-way ANOVA and Dunnett’s test. Error bars represent standard deviation. (C) Representative tissue microarray staining of emerin in 183 patients using emerin monoclonal antibodies (Leica, NCL-Emerin) or secondary alone (Vector Lab, cat#: MP-7452) using the same samples used in A. Nuclei are blue and emerin is brown. As aggressiveness of cases increases, there is a visible reduction in emerin expression and more deformed nuclei are present. (D) Quantification of emerin staining using the 0 to 3 grading system. N = 183 total samples #P < 0.02 compared to all non-cancerous tissue, *P < 0.0062 compared to both normal and benign tissue, one-way ANOVA and Dunnett’s test. Error bars represent standard deviation.

    Article Snippet: Reduced emerin expression at the nuclear periphery correlates with breast cancer invasiveness in patients. (A) Representative tissue microarray staining of emerin in 159 patients using emerin polyclonal antibodies (Proteintech, cat# 10351-1-AP) or secondary alone (Vector Lab, cat#: MP-7451).

    Techniques: Expressing, Microarray, Staining, Plasmid Preparation, Standard Deviation, Bioprocessing