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integrated protein structural domain and functional site databases  (InterPro Inc)

 
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    InterPro Inc integrated protein structural domain and functional site databases
    Integrated Protein Structural Domain And Functional Site Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protein-function+database/integrated+resource+of+protein+families++domains+and+sites++interpro++database/pmc11201992-8-20-1
    Average 90 stars, based on 1 article reviews
    integrated protein structural domain and functional site databases - by Bioz Stars, 2026-10
    90/100 stars

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    Functional Assay:

    Article Title: Telomere-to-telomere genome assembly of Electrophorus electricus provides insights into the evolution of electric eels
    Article Snippet: .. These databases include Gene Ontology ( RRID:SCR_002811 ) (GO), the Integrated Resource of Protein Domains and Functional Sites (InterPro) ( RRID:SCR_006695 ), the Kyoto Encyclopedia of Genes and Genomes (KEGG), SwissProt, TrEMBL, and the nonredundant protein database (NR). .. The alignment to the InterPro database was performed using InterProScan ( RRID:SCR_005829 ) (v5.45–80.0) [ ] with the parameters “-dp -f tsv -iprlookup -goterms.” For the other annotation processes, BLAST (v2.6.0) [ ] was utilized with the parameters “-b 100 -v 100 -p blastp -e 1e-05 -F F.” For each gene, the annotation term with the highest score was retained as the final functional annotation.

    Article Title: Advances in Integrated Multi-omics Analysis for Drug-Target Identification
    Article Snippet: .. , InterPro , http://www.ebi.ac.uk/interpro/ , Integrated protein structural domain and functional site databases with data resources on protein families, domains, repeat sequences, and sites of action , [ , ] . .. , Protein Structure Database , Protein Data Bank , https://www.rcsb.org , X-ray diffraction structures, NMR spectra, electron microscopy (EM) imaging, and some special structures (e.g., DNA and RNA structure libraries) are included. , [ ] .

    Article Title: Epigenetic insights into fertility: involvement of immune cell methylation in dairy cows reproduction.
    Article Snippet: Infertility and post-partum reproductive diseases are significant challenges in cattle farming, with the maternal immune system’s ability to recognize and tolerate the embryo being crucial for successful gestation.. DNA methylation in hematopoietic cells may influence susceptibility to post-partum fertility issues, making the identification of epigenetic changes vital for sustainable animal production.. This study aimed to characterize the methylome of immune cells in relation to fertility, potentially enabling early detection of subfertility.

    Article Title: Telomere-to-telomere genome assembly of Electrophorus electricus provides insights into the evolution of electric eels
    Article Snippet: .. These databases include Gene Ontology 210 8 (RRID:SCR_002811) (GO), the Integrated Resource of Protein Domains and Functional Sites 211 (InterPro) (RRID:SCR_006695), the Kyoto Encyclopedia of Genes and Genomes (KEGG), 212 SwissProt, TrEMBL, and the non-redundant protein database (NR). .. The alignment to the 213 InterPro database was performed using InterProScan (RRID:SCR_005829) (v5.45-80.0) [32] 214 with the parameters “-dp -f tsv -iprlookup -goterms”.

    Article Title: Telomere-to-Telomere Haplotype-Resolved Genomes of Agrocybe chaxingu Reveals Unique Genetic Features and Developmental Insights
    Article Snippet: .. For functional annotation of the predicted protein-coding genes, BLASTP v2.7.1 [ ] was used to align protein sequences against databases including Protein FAMilies Database (PFAM) [ ], Integrated Resource of Protein Domains and Functional Sites (InterPro) [ ], Clusters of Orthologous Groups (COGs) [ ], Gene Ontology Terms (GO Terms) [ ], BUSCO [ ], and Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups (EggNOG) [ ]. ..

    Article Title: Telomere-to-telomere genome assembly of Electrophorus electricus provides insights into the evolution of electric eels.
    Article Snippet: .. These databases include Gene Ontology ( RRID: SCR _ 002811 ) (GO), the Integrated Resource of Protein Domains nd Functional Sites (InterPro) ( RRID:SCR _ 006695 ), the Kyoto Enyclopedia of Genes and Genomes (KEGG), SwissProt, TrEMBL, nd the nonredundant protein database (NR). .. The alignment to he InterPro database was performed using InterProScan ( RRID: CR _ 005829 ) (v5.45–80.0) [ 32 ] with the parameters “-dp -f tsv - prlookup -goterms.” For the other annotation processes, BLAST v2.6.0) [ 26 ] was utilized with the parameters “-b 100 -v 100 -p lastp -e 1e-05 -F F.” For each gene, the annotation term with the ighest score was retained as the final functional annotation. dentification of orthologous genes rthologous genes among 7 species, including D. rerio GCF_000002035.6), Ictalurus punctatus (GCF_001660625.3), Pyocentrus nattereri (GCF_015220715.1), Tachysurus fulvidraco GCF_022655615.1), Astyanax mexicanus (GCF_023375975.1), ric hom ycterus rosablanca (GCF_030014385.1), and E. electricus , ere identified for the comparative genomic analyses.

    Article Title: Computational analysis of variant in tyrosinase protein using molecular dynamic simulation: An in silico approach
    Article Snippet: .. Interpro is a database of protein families, domain and functional sites in which identifiable feature found in known proteins can be applied to new protein sequences in order to functionally characterize them. ..

    Article Title: A synonymous KCNH2 polymorphism and methadone trough level influence QTc prolongation in Kelantanese Malay recipients of methadone maintenance therapy (MMT) in Malaysia
    Article Snippet: .. Before constructing the protein structure model, an integrated database of protein families, domains, and functional sites called InterPro was utilized to determine the domain architecture of KCNH2 protein sequences [ ]. ..



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