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SourceForge net codonw program version 1.4.2
Codonw Program Version 1.4.2, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/program+codonw/codonw+1+4+2/pm33548490-62-13-21
Average 90 stars, based on 1 article reviews
codonw program version 1.4.2 - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Evolutionary dynamics of the calcium/cation antiporter superfamily in Brassicaceae: codon usage, selection pressure, and BnCaCAs role in abiotic stress response
Article Snippet: Pfam: http://pfam.xfam.org/ ; HMMsearch: https://www.ebi.ac.uk/Tools/hmmer/search/hmmsearch ; SMART: http://smart.embl-heidelberg.de/ ; ProtParam: https://web.expasy.org/protparam/ ; CELLO: http://cello.life.nctu.edu.tw/ ; ProtComp 9.0: http://www.softberry.com/ ; DeepTMHHM: https://dtu.biolib.com/DeepTMHMM ; Multiple Em for Motif Elicitation: https://meme-suite.org/meme/tools/meme ; ClustalX v2.1: https://clustalx.software.informer.com/ ; MEGA7: https://www.megasoftware.net/ ; iTOL v6: https://itol.embl.de/ ; PlantCARE: https://bioinformatics.psb.ugent.be/webtools/plantcare/html/ ; CodonW v1.4.2: software https://sourceforge.net/projects/codonw/ ; MCScanX: https://github.com/wyp1125/MCScanX ; NGDC: https://ngdc.cncb.ac.cn/?lang=en ; TBtools: https://github.com/CJ-Chen/TBtools/releases ; FastQC: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ ; Trimmomatic: http://www.usadellab.org/cms/?page=trimmomatic ; STAR: http://code.google.com/p/rna-star/ ; DEseq2: http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html .

Article Title: Ross River virus genomes from Australia and the Pacific display coincidental and antagonistic codon usage patterns with common vertebrate hosts and a principal vector.
Article Snippet: Around 4500 Ross River virus (RRV) human cases are reported in Australia annually.. To date, there is no registered nor licenced vaccine to protect against RRV disease.. Identifying and substituting preferred with lesspreferred codons and dinucleotides is a recognised strategy to attenuate viruses and may prove useful to vaccine development efforts for RRV and other related viruses.

Article Title: Complete Mitochondrial Genome of Chlorogomphus papilio (Odonata: Anisoptera: Chlorogomphidae) and Phylogenetic Analyses
Article Snippet: Amino acid usage and relative synonymous codon usage (RSCU) of PGCs were analyzed using the codonW v1.4.4 software ( http://codonW.sourceforge.net accessed on 7 May 2024) [ ].

Article Title: The first complete mitochondrial genome of Eucommia ulmoides : a multi-chromosomal architecture and controversial phylogenetic relationship in asterids
Article Snippet: CodonW v1.4.2 ( http://codonw.sourceforge.net ) [ ] was utilized to analyze the codon preference of 38 PCGs within the E. ulmoides mitogenome, enabling the calculation of RSCU values.

Article Title: Identification of MRS2 Gene Family and Expression Analysis in Response to Magnesium Treatment in Malus domestica .
Article Snippet: Codon usage bias analysis was performed using CodonW v1.4.4 (http://codonw. sourceforge.net, accessed on 26 September 2024).

Article Title: Identification of MRS2 Gene Family and Expression Analysis in Response to Magnesium Treatment in Malus domestica
Article Snippet: Codon usage bias analysis was performed using CodonW v1.4.4 ( http://codonw.sourceforge.net , accessed on 26 September 2024).

Article Title: Genome-wide identification of the bZIP transcription factor family and expression analysis under abiotic stress in Zanthoxylum bungeanum.
Article Snippet: Codon usage pattern and synteny analysis The CDS of ZbbZIPs were analyzed using CodonW 1.4.2 to compute codon preferences based on 14 parameters (http:// codonw.sourceforge.net/).

Article Title: Mitochondrial PCGs Provide Novel Insights into Subspecies Classification, Codon Usage and Selection of Cervus canadensis Distributed in Qinghai and Gansu, China.
Article Snippet: The values for the effective number of codons (ENCs) were calculated using CodonW v1.4.4 (https://sourceforge.net/projects/codonw, accessed on 21 January 2024).



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