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principle component analysis (pca)  (Schmid GmbH)

 
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    Schmid GmbH principle component analysis (pca)
    Principle Component Analysis (Pca), supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/principle+component+analysis+function/principle+component+analysis/pm21852359-42-54-58
    Average 90 stars, based on 1 article reviews
    principle component analysis (pca) - by Bioz Stars, 2026-11
    90/100 stars

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    Article Title: Identification and testing of reference genes for gene expression analysis in pollen of Pyrus bretschneideri
    Article Snippet: Quantitative real-time PCR (qRT-PCR) is the preferred method for accurate analysis of targeted gene expression.. The aim of this study was to validate optimal reference genes for qRT-PCR analyses in pear pollen.. Ten candidate reference genes were chosen and examined in 36 pear samples.

    Article Title: Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds.
    Article Snippet: The above studies are important since they have led to the identification of better reference genes compared to the ones that were available previously. at Pennsylvania State U niversity on July 6, 2012 http://pcp.oxfordjournals.org/ D ow nloaded from 6 Different plant parts and tissues are expected to have distinct transcriptomes which was shown by Principle Component Analysis (PCA) (Schmid et al. 2005).



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    a Heat-map representation of viral gene expression levels (Et value, color scale bar) of 25 viral genes (x axis, infection phase and gene number) at 37 environmental samples, specifying station number and water depth (y axis), arranged by hierarchical clustering. b <t>Principle</t> <t>component</t> analysis <t>(PCA)</t> of the viral expression values for each environmental sample plotted over the axes of 1st component (PC1) vs. 2nd component (PC2). Samples are marked in a blue “+” or a red “x” according to the hierarchical clustering in the heat-map (a). c Coefficient values of viral genes for PC1 (x axis) and PC2 (y axis). The labels “Early” in blue, “Mid” in green, and “Late” in red represent the association of each viral gene to different phases of infection based on transcriptomic analysis [23, 24]. The gene number is depicted according to Supplementary Table S3
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    a Heat-map representation of viral gene expression levels (Et value, color scale bar) of 25 viral genes (x axis, infection phase and gene number) at 37 environmental samples, specifying station number and water depth (y axis), arranged by hierarchical clustering. b <t>Principle</t> <t>component</t> analysis <t>(PCA)</t> of the viral expression values for each environmental sample plotted over the axes of 1st component (PC1) vs. 2nd component (PC2). Samples are marked in a blue “+” or a red “x” according to the hierarchical clustering in the heat-map (a). c Coefficient values of viral genes for PC1 (x axis) and PC2 (y axis). The labels “Early” in blue, “Mid” in green, and “Late” in red represent the association of each viral gene to different phases of infection based on transcriptomic analysis [23, 24]. The gene number is depicted according to Supplementary Table S3
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    a Heat-map representation of viral gene expression levels (Et value, color scale bar) of 25 viral genes (x axis, infection phase and gene number) at 37 environmental samples, specifying station number and water depth (y axis), arranged by hierarchical clustering. b Principle component analysis (PCA) of the viral expression values for each environmental sample plotted over the axes of 1st component (PC1) vs. 2nd component (PC2). Samples are marked in a blue “+” or a red “x” according to the hierarchical clustering in the heat-map (a). c Coefficient values of viral genes for PC1 (x axis) and PC2 (y axis). The labels “Early” in blue, “Mid” in green, and “Late” in red represent the association of each viral gene to different phases of infection based on transcriptomic analysis [23, 24]. The gene number is depicted according to Supplementary Table S3

    Journal: The ISME Journal

    Article Title: Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export

    doi: 10.1038/s41396-017-0004-x

    Figure Lengend Snippet: a Heat-map representation of viral gene expression levels (Et value, color scale bar) of 25 viral genes (x axis, infection phase and gene number) at 37 environmental samples, specifying station number and water depth (y axis), arranged by hierarchical clustering. b Principle component analysis (PCA) of the viral expression values for each environmental sample plotted over the axes of 1st component (PC1) vs. 2nd component (PC2). Samples are marked in a blue “+” or a red “x” according to the hierarchical clustering in the heat-map (a). c Coefficient values of viral genes for PC1 (x axis) and PC2 (y axis). The labels “Early” in blue, “Mid” in green, and “Late” in red represent the association of each viral gene to different phases of infection based on transcriptomic analysis [23, 24]. The gene number is depicted according to Supplementary Table S3

    Article Snippet: Principle component analysis was conducted on normalized Et values using the principle component analysis (PCA) function in MATLAB (MathWorks).

    Techniques: Gene Expression, Infection, Environmental Sampling, Expressing