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    Structured Review

    Addgene inc custom vector
    Custom Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 12 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pbluescript+vector/SpCas9_sgRNA_expression_in_pBluescript+(Plasmid+%23122089)/pm40725481-48-43-45
    Average 93 stars, based on 12 article reviews
    custom vector - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    other:

    Article Title: The Disruption of the HIV-1 Gag Start Codon via Editing Using MmCas12m-Dual Base Editor-Loaded Virus-like Particles
    Article Snippet: The nucleotide sequence of both fusion proteins ( ) was cloned into psPAX2 via SphI and XcmI sites instead of the original sequence. psgRNA-MmCas12m and psgRNA-dSpCas9 encode specific single-guide RNA under the control of the U6 promoter. psgRNA-MmCas12m and psgRNA-dSpCas9 were obtained based on a donor plasmid (#122089, Addgene) by replacing the original sequence with the target sequence ( ) via PciI and KpnI sites. pKW was created by converting the Kozak sequence from GCCACCAUG to GATATCAUG in phMGFP using specific primers for site-directed mutagenesis.

    Article Title: The Disruption of the HIV-1 Gag Start Codon via Editing Using MmCas12m-Dual Base Editor-Loaded Virus-like Particles
    Article Snippet: The nucleotide sequence of both fusion proteins (Supplementary Figures S3 and S4) was cloned into psPAX2 via SphI and XcmI sites instead of the original sequence. psgRNA-MmCas12m and psgRNA-dSpCas9 encode specific single-guide RNA under the control of the U6 promoter. psgRNA-MmCas12m and psgRNA-dSpCas9 were obtained based on a donor plasmid (#122089, Addgene) by replacing the original sequence with the target sequence (Supplementary Figure S5) via PciI and KpnI sites. pKW was created by converting the Kozak sequence from GCCACCAUG to GATATCAUG in phMGFP using specific primers for site-directed mutagenesis.

    Expressing:

    Article Title: Detecting Methylation Changes Induced by Prime Editing
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing.
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: mRNA-engineered CRISPR-Cas epigenetic editors enable durable and efficient gene silencing in vivo
    Article Snippet: .. Briefly, gblocks (ordered from GenScript) containing a spacer-scaffold sequence (for sgRNAs) or a 3′ direct repeat (DR)-spacer sequence (for crRNAs) were cloned into U6 expression vectors (Addgene, #122089 and #217005) that had been linearized by BstXI and BlpI digestion, using the Gibson assembly method (New England Biolabs [NEB], #E2611L). ..

    Article Title: The Disruption of the HIV-1 Gag Start Codon via Editing Using MmCas12m-Dual Base Editor-Loaded Virus-like Particles
    Article Snippet: dSpCas9 (#201953, Addgene) , Mammalian expression plasmid of catalytically inactive SpCas9. .. SpCas9_sgRNA (#122089, Addgene) , U6 driven sgRNA expression vector for cloning own guides. .. phMGFP , Codes green fluorescent protein under the control of the CMV promoter.

    Polymerase Chain Reaction:

    Article Title: Detecting Methylation Changes Induced by Prime Editing
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing.
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Amplification:

    Article Title: Detecting Methylation Changes Induced by Prime Editing
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing.
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Clone Assay:

    Article Title: Detecting Methylation Changes Induced by Prime Editing
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing.
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: mRNA-engineered CRISPR-Cas epigenetic editors enable durable and efficient gene silencing in vivo
    Article Snippet: .. Briefly, gblocks (ordered from GenScript) containing a spacer-scaffold sequence (for sgRNAs) or a 3′ direct repeat (DR)-spacer sequence (for crRNAs) were cloned into U6 expression vectors (Addgene, #122089 and #217005) that had been linearized by BstXI and BlpI digestion, using the Gibson assembly method (New England Biolabs [NEB], #E2611L). ..

    Article Title: Enhancing prime editing in hematopoietic stem and progenitor cells by modulating nucleotide metabolism.
    Article Snippet: Therapeutic prime editing of hematopoietic stem and progenitor cells (HSPCs) holds great potential to remedy blood disorders.. Quiescent cells have low nucleotide levels and resist retroviral infection, and it is possible that nucleotide metabolism could limit reverse transcription-mediated prime editing in HSPCs.. We demonstrate that deoxynucleoside supplementation and Vpx-mediated degradation of SAMHD1 improve prime editing efficiency in HSPCs, especially when coupled with editing approaches that evade mismatch repair.

    Plasmid Preparation:

    Article Title: Detecting Methylation Changes Induced by Prime Editing
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing.
    Article Snippet: .. To generate pegRNA expression plasmids, gblocks or PCR products including spacer sequences, scaffold sequences, and 3′ extension sequences (pegRNA products from IDT) were amplified with indicated primers using Phusion master mix (Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently cloned into a custom vector (Addgene plasmid no. 122089, BfuAI- and EcoRI-digested) by the Gibson assembly method (NEB). ..

    Sequencing:

    Article Title: mRNA-engineered CRISPR-Cas epigenetic editors enable durable and efficient gene silencing in vivo
    Article Snippet: .. Briefly, gblocks (ordered from GenScript) containing a spacer-scaffold sequence (for sgRNAs) or a 3′ direct repeat (DR)-spacer sequence (for crRNAs) were cloned into U6 expression vectors (Addgene, #122089 and #217005) that had been linearized by BstXI and BlpI digestion, using the Gibson assembly method (New England Biolabs [NEB], #E2611L). ..

    Article Title: mRNA-Engineered CRISPR-Cas epigenetic editors enable durable and efficient gene silencing in Vivo
    Article Snippet: .. 86 MATERIALS AND METHODS 87 General methods and molecular cloning 88 Expression plasmids used for sgRNAs or crRNAs were constructed based on previously 89 described backbones.35 Briefly, gblocks (ordered from GenScript) containing a spacer-scaffold 90 sequence (for sgRNAs) or a 3’ Direct Repeat (DR)-spacer sequence (for crRNAs) were cloned 91 into U6 expression vectors (Addgene ##122089 and ##217005) that had been linearized by BstXI 92 and BlpI digestion, using the Gibson Assembly method (NEB, #E2611L). ..

    Molecular Cloning:

    Article Title: mRNA-Engineered CRISPR-Cas epigenetic editors enable durable and efficient gene silencing in Vivo
    Article Snippet: .. 86 MATERIALS AND METHODS 87 General methods and molecular cloning 88 Expression plasmids used for sgRNAs or crRNAs were constructed based on previously 89 described backbones.35 Briefly, gblocks (ordered from GenScript) containing a spacer-scaffold 90 sequence (for sgRNAs) or a 3’ Direct Repeat (DR)-spacer sequence (for crRNAs) were cloned 91 into U6 expression vectors (Addgene ##122089 and ##217005) that had been linearized by BstXI 92 and BlpI digestion, using the Gibson Assembly method (NEB, #E2611L). ..

    Construct:

    Article Title: mRNA-Engineered CRISPR-Cas epigenetic editors enable durable and efficient gene silencing in Vivo
    Article Snippet: .. 86 MATERIALS AND METHODS 87 General methods and molecular cloning 88 Expression plasmids used for sgRNAs or crRNAs were constructed based on previously 89 described backbones.35 Briefly, gblocks (ordered from GenScript) containing a spacer-scaffold 90 sequence (for sgRNAs) or a 3’ Direct Repeat (DR)-spacer sequence (for crRNAs) were cloned 91 into U6 expression vectors (Addgene ##122089 and ##217005) that had been linearized by BstXI 92 and BlpI digestion, using the Gibson Assembly method (NEB, #E2611L). ..

    Cloning:

    Article Title: The Disruption of the HIV-1 Gag Start Codon via Editing Using MmCas12m-Dual Base Editor-Loaded Virus-like Particles
    Article Snippet: dSpCas9 (#201953, Addgene) , Mammalian expression plasmid of catalytically inactive SpCas9. .. SpCas9_sgRNA (#122089, Addgene) , U6 driven sgRNA expression vector for cloning own guides. .. phMGFP , Codes green fluorescent protein under the control of the CMV promoter.



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    Image Search Results


    Journal: bioRxiv

    Article Title: CANVAS causing AAGGG repeat expansions cause tissue-specific reduction in RFC1 expression and increase sensitivity to DNA damage

    doi: 10.1101/2025.11.18.688292

    Figure Lengend Snippet:

    Article Snippet: Briefly, Firefly Luciferase plasmid and the repeat containing pBluescript vectors were digested with XbaI and NotI restriction enzymes (NEB), while pGint plasmid and pBluescript vectors were digested with NotI and BamHI restriction enzymes (NEB) at 37°C for 1 hour.

    Techniques: Luciferase