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10X Genomics cellranger multi function
Cellranger Multi Function, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/optimized+multi-parameter+mapping+sequence/function+mkfastq/pm40482637-445-25-28
Average 86 stars, based on 1 article reviews
cellranger multi function - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

RNA Sequencing:

Article Title: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model.
Article Snippet: .. RNA-seq data have been deposited in the BioStudies, and are available under the BioStudies: E-MTAB-13543. scRNA-seq quality control and data analysis Fastq files were generated and demultiplexed from raw base call (bcl) files using cellranger mkfastq pipeline.104 Alignment, filtering, barcode, and unique molecular identifier (UMI) counting were conducted with cellranger-8.0.1 count pipeline using the mouse reference assembly (mm10) and annotation available on 10x genomics website with default settings (https://www.10xgenomics.com). .. The files were loaded into R Studio (v.4.4.1) using the ‘load10X’ function from the Seurat 5.1.0 package.105 Samples were then Cell Stem Cell 32, 1–15.e1–e7, May 1, 2025 e6 merged to create a single Seurat object.

Control:

Article Title: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model.
Article Snippet: .. RNA-seq data have been deposited in the BioStudies, and are available under the BioStudies: E-MTAB-13543. scRNA-seq quality control and data analysis Fastq files were generated and demultiplexed from raw base call (bcl) files using cellranger mkfastq pipeline.104 Alignment, filtering, barcode, and unique molecular identifier (UMI) counting were conducted with cellranger-8.0.1 count pipeline using the mouse reference assembly (mm10) and annotation available on 10x genomics website with default settings (https://www.10xgenomics.com). .. The files were loaded into R Studio (v.4.4.1) using the ‘load10X’ function from the Seurat 5.1.0 package.105 Samples were then Cell Stem Cell 32, 1–15.e1–e7, May 1, 2025 e6 merged to create a single Seurat object.

Generated:

Article Title: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model.
Article Snippet: .. RNA-seq data have been deposited in the BioStudies, and are available under the BioStudies: E-MTAB-13543. scRNA-seq quality control and data analysis Fastq files were generated and demultiplexed from raw base call (bcl) files using cellranger mkfastq pipeline.104 Alignment, filtering, barcode, and unique molecular identifier (UMI) counting were conducted with cellranger-8.0.1 count pipeline using the mouse reference assembly (mm10) and annotation available on 10x genomics website with default settings (https://www.10xgenomics.com). .. The files were loaded into R Studio (v.4.4.1) using the ‘load10X’ function from the Seurat 5.1.0 package.105 Samples were then Cell Stem Cell 32, 1–15.e1–e7, May 1, 2025 e6 merged to create a single Seurat object.

Article Title: ETV1 is a key regulator of enteroendocrine PYY production
Article Snippet: .. FASTQ files were generated from raw base call files using Cell Ranger's mkfastq function [10X Genomics Cell Ranger v 6.1.0 ( )]. .. The HTO cDNA and endogenous cDNA libraries were diluted to 2 nM in EB buffer (Qiagen) and pooled to a final library (15% HTO and 85% endogenous cDNA).

Software:

Article Title: snRNA-seq analysis of the moss Physcomitriumpatens identifies a conserved cytokinin-ESR module promoting pluripotent stem cell identity.
Article Snippet: .. Then, a reference file for mapping and nucleus counting was created using the ‘‘cellranger mkref’’ function of the Cell Ranger software (10x Genomics). ..

Sequencing:

Article Title: Molecular and cellular dynamics of the developing human neocortex.
Article Snippet: .. The raw sequencing signals in the BCL format were demultiplexed into fastq format using the mkfastq function in the Cell Ranger suite (v.7.1.0, 10x Genomics). .. The Cell Ranger count pipeline was implemented for cell barcode calling, read alignment and quality assessment using the human reference genome (GRCh38, GENCODE v32/ Ensembl98) according to the protocols described by 10x Genomics.

Article Title: Massively parallel in vivo Perturb-seq screening
Article Snippet: After the next generation sequencing, demultiplex the sequencing files and generate FASTQ files using the cellranger mkfastq pipeline (10x Genomics). .. After the next generation sequencing, demultiplex the sequencing files and generate FASTQ files using the cellranger mkfastq pipeline (10x Genomics). ..

other:

Article Title: Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics
Article Snippet: Raw reads were mapped to the mm10 mouse reference genome and cell barcode demultiplexed to generate a per-cell count matrix of 9,000 nuclei using the CellRanger multi-function (v7.1.0 10x Genomics, Pleasanton CA) along with a force-cell parameter.

Next-Generation Sequencing:

Article Title: Massively parallel in vivo Perturb-seq screening
Article Snippet: After the next generation sequencing, demultiplex the sequencing files and generate FASTQ files using the cellranger mkfastq pipeline (10x Genomics). .. After the next generation sequencing, demultiplex the sequencing files and generate FASTQ files using the cellranger mkfastq pipeline (10x Genomics). ..



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Optimized Multi Parameter Mapping Sequence, supplied by Respiratory Motion, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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