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Omics Data Automation national omics data encyclopedia node
National Omics Data Encyclopedia Node, supplied by Omics Data Automation, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/node/data+encyclopedia+national+omics/pm42276047-223-8-9
Average 86 stars, based on 1 article reviews

national omics data encyclopedia node - by Bioz Stars, 2026-09

86/100 stars

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Modification:

Article Title: mTOR inhibition promotes ATRA-induced cancer cell differentiation by overcoming a metabolic hyperactive state.
Article Snippet: .. E. GO enrichment analysis of genes associated with treatment-specific super-enhancers from (D) Abbreviations ATRA All-trans retinoic acid AML Acute myeloid leukemia APL Acute promyelocytic leukemia RARs Retinoic acid receptors PAM PI3K-AKT-mTOR RRIDs Research resource identifiers STR Short tandem repeat IMDM Iscove’s Modified Dulbecco’s Medium DMEM Dulbecco’s Modified Eagle Medium FBS Fetal bovine serum scATAC-seq Single-cell Assay for Transposase-Accessible Chromatin using sequencing NODE National Omics Data Encyclopedia TSS Transcription start site P2G Peak-to-gene FDR False discovery rate UMAP Uniform Manifold Approximation and Projection PCA Principal Component Analysis DRUG-seq Digital RNA with pertUrbation of genes-seq cNMF Consensus non-negative matrix factorization GEPs Gene expression programs GO Gene ontology GREAT Genomic Regions Enrichment of Annotations Tool HOMER Hypergeometric Optimization of Motif EnRichment CUT&Tag Cleavage under targets & tagmentation ROSE Rank Ordering of Super-Enhancers SEs Super-enhancers IGV Integrative Genomics Viewer DEGs Differentially expressed genes CDX Cell-line derived xenografts IHC Immunohistochemistry MRS Metabolism Responsiveness Score ..

Single Cell:

Sequencing:

Article Title: Microbial drivers of ammonium accumulation in Holocene sediments of the Pearl River Delta.
Article Snippet: .. The raw metagenomic sequencing data generated in this study have been deposited in the National Omics Data Encyclopedia (NODE) under accession code OEP00006863 (https://www.biosino.org/node/browse?keyword=OEP00006863). ..

Gene Expression:

Derivative Assay:

Immunohistochemistry:

Produced:

Article Title: Large-scale profiling of blood microbial signatures in patients with Parkinson's disease and its association with disease progression: a cross-sectional study
Article Snippet: .. The outcomes of microbial annotation produced in this study were stored in a public database National Omics Data Encyclopedia (NODE), with access number OEZ00021768 ( https://www.biosino.org/node/review/detail/OEV00000669?code=UWBXEHCQ ) and OEZ00021769 ( https://www.biosino.org/node/review/detail/OEV00000668?code=VYR6RPBY ). ..

RNA sequencing:

Article Title: Dendritic Cells Derived MMP9 Fuels Sepsis-Induced Cardiac Dysfunction Through JNK/AP1 Driven Pro-Inflammatory Cytokine and Nitric Oxide Storm.
Article Snippet: .. RNA-Seq data can be viewed in 497 National Omics Data Encyclopedia (NODE) under the accession code 498 OEP003692 or through the URL. ..

Generated:

other:

Article Title: In-depth serum proteomics atlas of COVID-19 defines a Severity-Resistance Index from a four-protein panel for disease severity and prognosis.
Article Snippet: The raw proteomics data are deposited in National Omics Data Encyclopedia public repository (accession ID: OEP00006724).

Article Title: Paean: A unified and efficient transcriptome quantification system using heterogeneous computing.
Article Snippet: The rapid accumulation of RNA-seq data has raised a higher requirement on the performance of analytic methods.. However, existing data analysis pipelines, which are all developed on CPU architecture, take tremendous computational resource to analyze gene expression and alternative splicing in two different computation models, limiting the applications of large RNA-seq datasets.. We developed a parallel computing system on GPU-CPU platforms (Parallel analyzer, Paean), which integrates two efficient and highly parallel algorithms into one unified pipeline to facilitate rapid calculation of expression levels and alternative splicing ratios of all genes.

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