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multiple sequence alignment  (CLC Bio)

 
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    CLC Bio multiple sequence alignment
    Multiple Sequence Alignment, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/multiple+sequence+alignment+viewer/multiple+sequence+alignment++msa++clc+genomics+workbench+v7+0+5/pmc04028329-52-24-34
    Average 90 stars, based on 1 article reviews
    multiple sequence alignment - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Residues in the fingers domain of the translesion DNA polymerase DinB enable its unique participation in error-prone double-strand break repair
    Article Snippet: .. Multiple sequence alignments (MSAs) of DinB, DNA polymerase V, and DNA polymerase II sequences were performed using CLC Bio (Qiagen, Redwood City, CA). ..

    Article Title: APeg3: regulation of Peg3 through an evolutionarily conserved ncRNA
    Article Snippet: .. After our initial inspection of the retrieved sequences, one representative sequence from each order of placental mammals was used for sequence alignment with the ClustalW multiple sequence alignment ( http://www.genome.jp/tools/clustalw/ ) as well as CLC Bio Workbench. .. The 1.5-kb genomic region for each species' APeg3 gene is as follows: Mus musculus for Rodentia (GRCm38/mm10 chr7: 6,706,295–6,707,624), Homo sapiens for Primates (GRCh37/hg19 chr19: 57,323,893–57,325,161), Equus caballus for Perissodactyla (Broad/EquCab2 chr10: 25,780,355–25,781,617), Oryctolagus cuniculis for Lagomorpha (Broad/oryCun2 chrUn0113: 622,308–623,587), Loxodonta africana for Proboscidea (Broad/loxAfr3 scaffold_4: 18,505,516–18,506,810), Tursiops truncatus for Cetacea (Baylor Ttru_1.4/turTru2 {"type":"entrez-nucleotide","attrs":{"text":"JH478484","term_id":"366976673","term_text":"JH478484"}} JH478484 : 13,610–14,893), Myotis lucifugus for Chiroptera (Broad Institute Myoluc2.0/myoluc2 {"type":"entrez-nucleotide","attrs":{"text":"GL430552","term_id":"306962815","term_text":"GL430552"}} GL430552 : 92,812– 94,034), Dasypus novemcinctus for Cingulata (Baylor/dasNov3 {"type":"entrez-nucleotide","attrs":{"text":"JH562679","term_id":"371484130","term_text":"JH562679"}} JH562679 : 85,036–86,329) and Trichechus manatus for Sirenia (Broad v1.0/triMan1 {"type":"entrez-nucleotide","attrs":{"text":"JH594782","term_id":"373520755","term_text":"JH594782"}} JH594782 : 4,734,304–4,735,606).

    other:

    Article Title: Extrapolation of Inter Domain Communications and Substrate Binding Cavity of Camel HSP70 1A: A Molecular Modeling and Dynamics Simulation Study
    Article Snippet: To identify the homology of the HSPA1A/1AB gene in different species, the Multiple Sequence Alignment (MSA) was performed using CLC-Genomics workbench v7.0.5 (CLC Bio, Aarhus, Denmark).



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    Image Search Results


    ASVs identified in cats with at least 97% sequence identity with P. hiranonis of the sequenced V4 region of the 16S rRNA gene.

    Journal: Frontiers in Microbiology

    Article Title: Fecal bile acid dysmetabolism and reduced ursodeoxycholic acid correlate with novel microbial signatures in feline chronic kidney disease

    doi: 10.3389/fmicb.2024.1458090

    Figure Lengend Snippet: ASVs identified in cats with at least 97% sequence identity with P. hiranonis of the sequenced V4 region of the 16S rRNA gene.

    Article Snippet: Further evaluation of 16S rRNA gene amplicon sequence taxonomy was performed using National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) ( ) as well as the NCBI Multiple Sequence Alignment Viewer (v1.25.0).

    Techniques: Sequencing, Amplification

    ASVs from the order Oscillospirales with significant correlations to fecal bile acid composition in cats.

    Journal: Frontiers in Microbiology

    Article Title: Fecal bile acid dysmetabolism and reduced ursodeoxycholic acid correlate with novel microbial signatures in feline chronic kidney disease

    doi: 10.3389/fmicb.2024.1458090

    Figure Lengend Snippet: ASVs from the order Oscillospirales with significant correlations to fecal bile acid composition in cats.

    Article Snippet: Further evaluation of 16S rRNA gene amplicon sequence taxonomy was performed using National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) ( ) as well as the NCBI Multiple Sequence Alignment Viewer (v1.25.0).

    Techniques: Amplification, Sequencing

    Release version and number of member database signatures integrated into InterPro version 81.0

    Journal: Nucleic Acids Research

    Article Title: The InterPro protein families and domains database: 20 years on

    doi: 10.1093/nar/gkaa977

    Figure Lengend Snippet: Release version and number of member database signatures integrated into InterPro version 81.0

    Article Snippet: With the release of InterPro 80.0, we have added a viewer for multiple sequence alignments of Pfam entries.

    Techniques:

    The InterPro multiple sequence alignment viewer for the P53 DNA-binding domain ( https://www.ebi.ac.uk/interpro/entry/pfam/PF00870/entry_alignments/ ).

    Journal: Nucleic Acids Research

    Article Title: The InterPro protein families and domains database: 20 years on

    doi: 10.1093/nar/gkaa977

    Figure Lengend Snippet: The InterPro multiple sequence alignment viewer for the P53 DNA-binding domain ( https://www.ebi.ac.uk/interpro/entry/pfam/PF00870/entry_alignments/ ).

    Article Snippet: With the release of InterPro 80.0, we have added a viewer for multiple sequence alignments of Pfam entries.

    Techniques: Sequencing, Binding Assay