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Zinsser Analytic microgrid ii microarray spotter
Self-self hybridization at 56°C of 5 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the <t>microarray</t> slide. (a, c) Detection of MiR-9 (yellow spots, black arrow) and miR-9* (yellow spots, white arrow) with LNA probes. (b, d) Detection of snoRNAs (yellow spots) with antisense DNA probes (including mismatch probes in (d)). Sense DNA probes signals were below detection levels and thus filtered out. (a, b) RNA labeling using the protocol described by manufacturer. (c, d) Modified RNA labeling (see ).
Microgrid Ii Microarray Spotter, supplied by Zinsser Analytic, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microgrid+ii+microarray+printer/microgrid+ii+microarrayer/pmc03384982-27-30-34
Average 90 stars, based on 1 article reviews
microgrid ii microarray spotter - by Bioz Stars, 2026-09
90/100 stars

Images

1) Product Images from "Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray"

Article Title: Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray

Journal: Journal of Nucleic Acids

doi: 10.1155/2012/283560

Self-self hybridization at 56°C of 5 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. (a, c) Detection of MiR-9 (yellow spots, black arrow) and miR-9* (yellow spots, white arrow) with LNA probes. (b, d) Detection of snoRNAs (yellow spots) with antisense DNA probes (including mismatch probes in (d)). Sense DNA probes signals were below detection levels and thus filtered out. (a, b) RNA labeling using the protocol described by manufacturer. (c, d) Modified RNA labeling (see ).
Figure Legend Snippet: Self-self hybridization at 56°C of 5 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. (a, c) Detection of MiR-9 (yellow spots, black arrow) and miR-9* (yellow spots, white arrow) with LNA probes. (b, d) Detection of snoRNAs (yellow spots) with antisense DNA probes (including mismatch probes in (d)). Sense DNA probes signals were below detection levels and thus filtered out. (a, b) RNA labeling using the protocol described by manufacturer. (c, d) Modified RNA labeling (see ).

Techniques Used: Hybridization, Labeling, Microarray, Modification

Self-self hybridization at 56°C of 1 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor 3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. Detection of (a) tRNAs (yellow spots) and (b) 7SK RNA (yellow spots) with antisense DNA probes (including mismatch and deletion probes). Sense DNA probes were below detection levels and thus filtered out. (c) Diagram showing mean intensity values ( y axis) of DNA probes for detection of highly structured ncRNAs.
Figure Legend Snippet: Self-self hybridization at 56°C of 1 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor 3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. Detection of (a) tRNAs (yellow spots) and (b) 7SK RNA (yellow spots) with antisense DNA probes (including mismatch and deletion probes). Sense DNA probes were below detection levels and thus filtered out. (c) Diagram showing mean intensity values ( y axis) of DNA probes for detection of highly structured ncRNAs.

Techniques Used: Hybridization, Labeling, Microarray

Self-self hybridization at 64°C of 2 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. (a) Detection of snoRNAs (yellow spots) with antisense DNA probes. (b) Detection of miR-9 (yellow spots, black arrows) and miR-9* (yellow spots, white arrow). Sense DNA probes were below detection levels and filtered out. (c) Diagram showing mean intensity values ( y axis) of all antisense DNA probes detecting snoRNAs.
Figure Legend Snippet: Self-self hybridization at 64°C of 2 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. (a) Detection of snoRNAs (yellow spots) with antisense DNA probes. (b) Detection of miR-9 (yellow spots, black arrows) and miR-9* (yellow spots, white arrow). Sense DNA probes were below detection levels and filtered out. (c) Diagram showing mean intensity values ( y axis) of all antisense DNA probes detecting snoRNAs.

Techniques Used: Hybridization, Labeling, Microarray

Self-self hybridization at 64°C of 2 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. (a) Detection of snoZ39 (yellow spots) with antisense DNA probes (black arrow, blow up) and one nucleotide mismatch DNA probe (white arrow, blow up). (b) Diagram showing on the y axis the percentage of mean detection value of the antisense probe SNOZ39−6–60MM1 and the one nucleotide mismatch probe SNOZ39−6–60MM1. (c) Diagram showing the mean intensity values ( y axis) of the antisense probes of one (MM1) and two (MM2) nucleotide mismatch probes for 7SK RNA and SNORD55.
Figure Legend Snippet: Self-self hybridization at 64°C of 2 μ g (per dye) of labeled total mouse brain RNA. Diagrams of average intensity values show filtered results in logarithmic scale. The y axis represents values of AlexaFluor3 dye measurement at 532 nm, and the x axis represents values of AlexaFluor5 dye measurement at 635 nm. Red spots represent all signals from LNA and DNA probes spotted on the microarray slide. (a) Detection of snoZ39 (yellow spots) with antisense DNA probes (black arrow, blow up) and one nucleotide mismatch DNA probe (white arrow, blow up). (b) Diagram showing on the y axis the percentage of mean detection value of the antisense probe SNOZ39−6–60MM1 and the one nucleotide mismatch probe SNOZ39−6–60MM1. (c) Diagram showing the mean intensity values ( y axis) of the antisense probes of one (MM1) and two (MM2) nucleotide mismatch probes for 7SK RNA and SNORD55.

Techniques Used: Hybridization, Labeling, Microarray

(a) Heat map showing differential expression between brain and mouse embryonic stem cells of ncRNAs spotted on the DNA-LNA microarray. Up- and downregulation of ncRNAs in brain are indicated with red or green color, respectively. Only differential expression of at least two folds is indicated. (b) Northern blot showing expression of SNORD55 and SNORA71 in mouse embryonic stem cells and mouse brain. Ten micrograms of total RNA were used, and 5.8S rRNA was used as a loading control.
Figure Legend Snippet: (a) Heat map showing differential expression between brain and mouse embryonic stem cells of ncRNAs spotted on the DNA-LNA microarray. Up- and downregulation of ncRNAs in brain are indicated with red or green color, respectively. Only differential expression of at least two folds is indicated. (b) Northern blot showing expression of SNORD55 and SNORA71 in mouse embryonic stem cells and mouse brain. Ten micrograms of total RNA were used, and 5.8S rRNA was used as a loading control.

Techniques Used: Quantitative Proteomics, Microarray, Northern Blot, Expressing, Control

Real-time PCR verification of differential expression of selected ncRNAs captured by DNA and LNA probes on the DNA/LNA microarray platform. Results are represented as relative expression levels between mouse ES cells and mouse brain. Data are shown as mean ± SEM; n = 5; * P < 0.05; ** P < 0.01, *** P < 0.005 significantly different from mES cells by Student t -test.
Figure Legend Snippet: Real-time PCR verification of differential expression of selected ncRNAs captured by DNA and LNA probes on the DNA/LNA microarray platform. Results are represented as relative expression levels between mouse ES cells and mouse brain. Data are shown as mean ± SEM; n = 5; * P < 0.05; ** P < 0.01, *** P < 0.005 significantly different from mES cells by Student t -test.

Techniques Used: Real-time Polymerase Chain Reaction, Quantitative Proteomics, Microarray, Expressing

Related Articles

Microarray:

Article Title: Generation of a neuro-specific microarray reveals novel differentially expressed noncoding RNAs in mouse models for neurodegenerative diseases
Article Snippet: .. The neuro-ncRNA microarray was generated using the MicroGrid II Microarray Spotter (Zinsser Analytic). .. Thereby, 3977 oligonucleotides were dissolved in spotting buffer consisting of 3× SSC, 1.5 M betaine, yielding a concentration of 25 μm, and spotted on HiSens epoxy-coated glass slides (SCHOTT).

Article Title: Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum.
Article Snippet: The integrity of the RNA was checked by RTPCR of ATPase genes after ensuring absence of contaminating DNA by PCR and additionally controlled in a BioAnalyzer (Agilent, Böblingen, Germany) run. .. DNA Microarray The C. acetobutylicum array was constructed by spotting 5 amino-C6-modified oligonucleotides with a length of 60–70 bases on CodeLink microarray slides (SurModics, Eden Prairie, Minn., USA) using a MicroGrid II microarray spotter (Zinsser Analytic, Frankfurt, Germany). ..

Article Title: Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray
Article Snippet: .. The LNA-based capture probe set for short ncRNAs as well as the self-designed DNA-based capture probe set for long ncRNAs was spotted on HiSens epoxy-coated glass slides (Nexterion) using the MicroGrid II Microarray Spotter (Zinsser Analytic). ..

Article Title: RACK1/Asc1p, a Ribosomal Node in Cellular Signaling
Article Snippet: Microarray Analysis The array was constructed by spotting a 15 μ m solution of 5′ amino-C6-modified oligonucleotides in 50 m m sodium phosphate pH 8.5 with a length of 70 bases on CodeLink microarray slides (SurModics, Eden Prairie, MN) using a MicroGrid II microarray spotter (Zinsser Analytic, Frankfurt, Germany). .. Microarray Analysis The array was constructed by spotting a 15 μ m solution of 5′ amino-C6-modified oligonucleotides in 50 m m sodium phosphate pH 8.5 with a length of 70 bases on CodeLink microarray slides (SurModics, Eden Prairie, MN) using a MicroGrid II microarray spotter (Zinsser Analytic, Frankfurt, Germany). ..

Generated:

Article Title: Generation of a neuro-specific microarray reveals novel differentially expressed noncoding RNAs in mouse models for neurodegenerative diseases
Article Snippet: .. The neuro-ncRNA microarray was generated using the MicroGrid II Microarray Spotter (Zinsser Analytic). .. Thereby, 3977 oligonucleotides were dissolved in spotting buffer consisting of 3× SSC, 1.5 M betaine, yielding a concentration of 25 μm, and spotted on HiSens epoxy-coated glass slides (SCHOTT).

Produced:

Article Title: Identification of differential and functionally active miRNAs in both anaplastic lymphoma kinase (ALK) + and ALK − anaplastic large-cell lymphoma
Article Snippet: .. miRNA chips were produced by spotting the LNA-modified miRCURY LNA miRNA Array ready-to-spot probe set no. 208010-A (Exiqon), which consists of 2,056 capture probes designed to have a uniform temperature of 72 °C and covers all miRNAs of miRBase version 9.2 ( http://www.mirbase.org/ ) in eight replicates on Hisens epoxy-coated glass slides (Nexterion) using the MicroGrid II Microarrayer (Zinsser Analytic). .. Microarrays with immobilized LNA-modified capture probes were hybridized for 16 h at 65 °C on a Slide Booster (Advalytix) in hybridization buffer, followed by three washes in buffers of increasing stringency according to the manufacturer's instructions (Exiqon).

Construct:

Article Title: Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum.
Article Snippet: The integrity of the RNA was checked by RTPCR of ATPase genes after ensuring absence of contaminating DNA by PCR and additionally controlled in a BioAnalyzer (Agilent, Böblingen, Germany) run. .. DNA Microarray The C. acetobutylicum array was constructed by spotting 5 amino-C6-modified oligonucleotides with a length of 60–70 bases on CodeLink microarray slides (SurModics, Eden Prairie, Minn., USA) using a MicroGrid II microarray spotter (Zinsser Analytic, Frankfurt, Germany). ..

Article Title: RACK1/Asc1p, a Ribosomal Node in Cellular Signaling
Article Snippet: Microarray Analysis The array was constructed by spotting a 15 μ m solution of 5′ amino-C6-modified oligonucleotides in 50 m m sodium phosphate pH 8.5 with a length of 70 bases on CodeLink microarray slides (SurModics, Eden Prairie, MN) using a MicroGrid II microarray spotter (Zinsser Analytic, Frankfurt, Germany). .. Microarray Analysis The array was constructed by spotting a 15 μ m solution of 5′ amino-C6-modified oligonucleotides in 50 m m sodium phosphate pH 8.5 with a length of 70 bases on CodeLink microarray slides (SurModics, Eden Prairie, MN) using a MicroGrid II microarray spotter (Zinsser Analytic, Frankfurt, Germany). ..

other:

Article Title: UCP1 (thermogenin)—inducing agents for use in the treatment of a disorder of the energy homeostasis
Article Snippet: Two cell populations, termed hMADS-2 and hMADS-3 cells respectively, were used for cell culture experiments which were proliferated in 100 mm cell culture dishes (Greiner Bio-One, Cat. no. 664160).



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Image Search Results


Glycan Array Analysis of AgRP Binding to Heparan Sulfate Oligosaccharides (A) Fluorescent image of the glass slide glycan arrays showing fluorescence signals (green dots) of AgRP binding to 52 immobilized heparan sulfate oligosaccharides (low-molecular-weight heparan sulfate, LMHS). (B) Bar graph showing the relative fluorescence intensity of AgRP binding to the heparan sulfate oligosaccharides arrays. Heparan sulfate oligosaccharides 22 and 41 show the highest intensity. (C) The structures of the different heparan sulfate oligosaccharides on the slide microarray in A. Data are represented as mean ± SEM.

Journal: iScience

Article Title: Charge Characteristics of Agouti-Related Protein Implicate Potent Involvement of Heparan Sulfate Proteoglycans in Metabolic Function

doi: 10.1016/j.isci.2019.10.061

Figure Lengend Snippet: Glycan Array Analysis of AgRP Binding to Heparan Sulfate Oligosaccharides (A) Fluorescent image of the glass slide glycan arrays showing fluorescence signals (green dots) of AgRP binding to 52 immobilized heparan sulfate oligosaccharides (low-molecular-weight heparan sulfate, LMHS). (B) Bar graph showing the relative fluorescence intensity of AgRP binding to the heparan sulfate oligosaccharides arrays. Heparan sulfate oligosaccharides 22 and 41 show the highest intensity. (C) The structures of the different heparan sulfate oligosaccharides on the slide microarray in A. Data are represented as mean ± SEM.

Article Snippet: Amine(-NH 2 )-linked heparan sulfate glycan compounds (Glycan Therapeutics) were immobilized on NHS-activated surface-coated slides (Nexterion Slide-H, Applied Microarrays) using a robotic microarray printer (Microgrid II, Digilab) that was equipped with StealthSMP4B microarray pins (Telechem) to couple heparan sulfate glycan compounds by covalent binding via (-NH 2 ) reactive chemistry.

Techniques: Glycoproteomics, Binding Assay, Fluorescence, Molecular Weight, Microarray

Testing the limits of NRF2 binding. Systematic multivariate ARE results by protein binding microarray for NRF2-MAFG heterodimer are shown. Tolerance for sequence variation was studied for positions 1–3 (white), 6–8 (grey) and 9–11 (dark grey) ( A ) and positions 1, 5 and 11 (seed sequences are shown in grey) ( B ). Results are depicted as measured binding relative to NQO1.ARE binding (black) (mean ± S.E.M., n = 45).

Journal: Nucleic Acids Research

Article Title: The Effects of Sequence Variation on Genome-wide NRF2 Binding—New Target Genes and Regulatory SNPs

doi: 10.1093/nar/gkw052

Figure Lengend Snippet: Testing the limits of NRF2 binding. Systematic multivariate ARE results by protein binding microarray for NRF2-MAFG heterodimer are shown. Tolerance for sequence variation was studied for positions 1–3 (white), 6–8 (grey) and 9–11 (dark grey) ( A ) and positions 1, 5 and 11 (seed sequences are shown in grey) ( B ). Results are depicted as measured binding relative to NQO1.ARE binding (black) (mean ± S.E.M., n = 45).

Article Snippet: The dilutions were dispensed in a 384-well plate (polypropylene plate No 267462, Nunc, N.Y, USA) and printed onto the avidin-coated glass slides with a microarray printer (BioRobotics MicroGrid II, BioRobotics Ltd, Cambridge, UK).

Techniques: Binding Assay, Protein Binding, Microarray, Sequencing

A SNP in FTL promoter has drastic effects of NRF2 binding and transcriptional activation. ( A ) A promoter analysis of the FTL gene at chr19 showing the location of experimentally verified NRF2 binding ARE together with dbSNP (v138) and ENCODE ChIP-seq data. ChIP-seq track displays combined MAFF and MAFK binding signals in H1-hESC (MAFK), K562 (MAFF, MAFK), HeLa-S3 (MAFK), HepG (MAFF, MAFK) and IMR90 (MAFK) cell lines. ( B ) Detailed view showing FTL ARE sequence and the SNP (rs113067944, A→C) position. ( C ) Protein binding microarray results for FTL.ARE.A and the SNP bearing FTL.ARE.C. Results are calculated as measured binding relative to NQO1.ARE binding (mean ± S.E.M, n = 39.). Scramble oligonucleotides served as negative control. ( D ) HEK-293T cells were transfected with NQO1-ARE and FTL-ARE bearing either allele A or allele C with and without NRF2 -expressing plasmids. Twenty-four h after transfection cells were treated with NRF2 inducer (L-SFN) for 16 h followed by luciferase activity measurements. An empty pGL3 promoter vector served as control and activities were normalized to β-galactosidase activity. Results are shown relative to control (mean± S.E.M, n = 4).

Journal: Nucleic Acids Research

Article Title: The Effects of Sequence Variation on Genome-wide NRF2 Binding—New Target Genes and Regulatory SNPs

doi: 10.1093/nar/gkw052

Figure Lengend Snippet: A SNP in FTL promoter has drastic effects of NRF2 binding and transcriptional activation. ( A ) A promoter analysis of the FTL gene at chr19 showing the location of experimentally verified NRF2 binding ARE together with dbSNP (v138) and ENCODE ChIP-seq data. ChIP-seq track displays combined MAFF and MAFK binding signals in H1-hESC (MAFK), K562 (MAFF, MAFK), HeLa-S3 (MAFK), HepG (MAFF, MAFK) and IMR90 (MAFK) cell lines. ( B ) Detailed view showing FTL ARE sequence and the SNP (rs113067944, A→C) position. ( C ) Protein binding microarray results for FTL.ARE.A and the SNP bearing FTL.ARE.C. Results are calculated as measured binding relative to NQO1.ARE binding (mean ± S.E.M, n = 39.). Scramble oligonucleotides served as negative control. ( D ) HEK-293T cells were transfected with NQO1-ARE and FTL-ARE bearing either allele A or allele C with and without NRF2 -expressing plasmids. Twenty-four h after transfection cells were treated with NRF2 inducer (L-SFN) for 16 h followed by luciferase activity measurements. An empty pGL3 promoter vector served as control and activities were normalized to β-galactosidase activity. Results are shown relative to control (mean± S.E.M, n = 4).

Article Snippet: The dilutions were dispensed in a 384-well plate (polypropylene plate No 267462, Nunc, N.Y, USA) and printed onto the avidin-coated glass slides with a microarray printer (BioRobotics MicroGrid II, BioRobotics Ltd, Cambridge, UK).

Techniques: Binding Assay, Activation Assay, ChIP-sequencing, Sequencing, Protein Binding, Microarray, Negative Control, Transfection, Expressing, Luciferase, Activity Assay, Plasmid Preparation, Control