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Agendia BV agendia mammaprint microarray
<t> Microarray </t> data sets used for model development and validation in the MAQC-II project
Agendia Mammaprint Microarray, supplied by Agendia BV, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray-based+gene-expression+test/agendia+microarray/pmc03315840-59-19-18
Average 90 stars, based on 1 article reviews
agendia mammaprint microarray - by Bioz Stars, 2026-09
90/100 stars

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1) Product Images from "The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models"

Article Title: The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Journal: Nature Biotechnology

doi: 10.1038/nbt.1665

 Microarray  data sets used for model development and validation in the MAQC-II project
Figure Legend Snippet: Microarray data sets used for model development and validation in the MAQC-II project

Techniques Used: Microarray, Generated, Positive Control, Negative Control

Related Articles

Expressing:

Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas
Article Snippet: .. SOD3 expression is downregulated in breast tumours Agendia gene array analysis performed on clinical specimens collected from the BCCR showed that there was a significant decrease in SOD3 expression in breast tumours when compared to the normal tissues (Median = 10.991 vs. 12.215 or 2.33 fold reduction), as shown in ). ..

Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas
Article Snippet: .. Two breast cancer datasets in Oncomine, the Curtis Breast [ 20 ] ( )) and Gluck Breast [ 21 ] ( )) also show that the lowest SOD3 expression levels were detected in Luminal B breast cancers (red arrow). fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window Figure 1. caption a7 SOD3 expression is downregulated in breast cancer. (a) Comparison of SOD3 expression in breast tumours versus normal breast tissues with Agendia array analysis. ..

other:

Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas
Article Snippet: The tissue type is indicated on the left edge of the heatmap Luminal B subtype shows the highest correlation of SOD3 methylation with its expression We then determined the correlation between the % methylation and SOD3 expression (from the Agendia microarray) with Spearman’s correlation coefficient analysis (R values).

Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas.
Article Snippet: Luminal B subtype shows the highest correlation of SOD3 methylation with its expression We then determined the correlation between the % methylation and SOD3 expression (from the Agendia microarray) with Spearman’s correlation coefficient analysis (R values).

Polymerase Chain Reaction:

Article Title: Phase II Trial of Neoadjuvant Carboplatin and Nab‐Paclitaxel in Patients with Triple‐Negative Breast Cancer
Article Snippet: .. Treatment‐related adverse events ( n = 67) Analysis of Biomarkers with pCR : DRD Mutation, TNBC Molecular Subtype, TILs , and GSIS Of 67 patients, Agendia microarray was performed from 63 baseline tumor biopsies to obtain MammaPrint profiles and full genome mRNA profiling. ..

Mutagenesis:

Article Title: Phase II Trial of Neoadjuvant Carboplatin and Nab‐Paclitaxel in Patients with Triple‐Negative Breast Cancer
Article Snippet: .. Treatment‐related adverse events ( n = 67) Analysis of Biomarkers with pCR : DRD Mutation, TNBC Molecular Subtype, TILs , and GSIS Of 67 patients, Agendia microarray was performed from 63 baseline tumor biopsies to obtain MammaPrint profiles and full genome mRNA profiling. ..

Microarray:

Article Title: Phase II Trial of Neoadjuvant Carboplatin and Nab‐Paclitaxel in Patients with Triple‐Negative Breast Cancer
Article Snippet: .. Treatment‐related adverse events ( n = 67) Analysis of Biomarkers with pCR : DRD Mutation, TNBC Molecular Subtype, TILs , and GSIS Of 67 patients, Agendia microarray was performed from 63 baseline tumor biopsies to obtain MammaPrint profiles and full genome mRNA profiling. ..

Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas.
Article Snippet: We thank Oleg Shats (Assistant Director for Cancer Informatics at UNMC), Dr. David Kelly (Director, Molecular Biology Core Facility, Eppley Cancer Institute, UNMC) for clinical data verification. .. We also acknowledge the contribution by Dr. Peng Xiao (Director, Bioinformatics and Systems Biology Core, UNMC) for analyzing the Agendia microarray data and providing bioinformatics supports. ..

Article Title: Phase II Trial of Neoadjuvant Carboplatin and Nab‐Paclitaxel in Patients with Triple‐Negative Breast Cancer
Article Snippet: .. All subsequent biomarker analysis is based on the 63 patients with Agendia microarray result. ..

Article Title: Phase II Trial of Neoadjuvant Carboplatin and Nab‐Paclitaxel in Patients with Triple‐Negative Breast Cancer
Article Snippet: .. Of 67 patients, Agendia microarray was performed from 63 baseline tumor biopsies to obtain MammaPrint profiles and full genome mRNA profiling. ..

Comparison:

Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas
Article Snippet: .. Two breast cancer datasets in Oncomine, the Curtis Breast [ 20 ] ( )) and Gluck Breast [ 21 ] ( )) also show that the lowest SOD3 expression levels were detected in Luminal B breast cancers (red arrow). fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window Figure 1. caption a7 SOD3 expression is downregulated in breast cancer. (a) Comparison of SOD3 expression in breast tumours versus normal breast tissues with Agendia array analysis. ..

Biomarker Discovery:

Article Title: Phase II Trial of Neoadjuvant Carboplatin and Nab‐Paclitaxel in Patients with Triple‐Negative Breast Cancer
Article Snippet: .. All subsequent biomarker analysis is based on the 63 patients with Agendia microarray result. ..



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