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Allen Institute for Brain Science whole-brain microarray-based gene expression data
Whole Brain Microarray Based Gene Expression Data, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray-based+assay/allen+mouse+brain+atlas/pm40328421-84-0-17
Average 90 stars, based on 1 article reviews
whole-brain microarray-based gene expression data - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Dysfunction and recovery of the cortical connectome gradient and its association with gene expression profiles in methamphetamine and heroin use disorders.
Article Snippet: Background: The hierarchy and segregation of community-based brain networks can be characterized by functional connectome gradient (FCG).. Whether the cortical FCG was disrupted and could even be reversed after prolonged abstinence in substance use disorders (SUDs) remained unclear.. Less is known about the underlying genetic basis.

Article Title: Electrical Stimulation of the M1 Activates Somatostatin Interneurons in the S1: Potential Mechanisms Underlying Pain Suppression
Article Snippet: Neuron 10456 2: 202-216 e207 457 Allen Institute for Brain Science (2011) Allen Reference Atlas – Mouse Brain [brain atlas].

In Situ Hybridization:

Article Title: Correlation of repetitive behaviors in deer mice with striatal mRNA expression of endogenous opioids and mu, delta, kappa, and dopamine receptors.
Article Snippet: Deer mice provide a valuable naturally occurring animal model for investigating pathophysiological mechanisms underlying repetitive behaviors.. Prior investigations using this model have identified abnormalities in the cortico-basal ganglia circuitry, including alterations within the indirect pathway and levels of endogenous opioids in the frontal cortex.. In this study, the behaviors of n=7 mice were quantified, and their brains were sectioned.

Article Title: Pharmacological and resting state fMRI reveal Osteocalcin’s effects on mouse brain regions with high Gpr37 and Gpr158 expression
Article Snippet: .. The database for in-situ hybridization whole-brain gene expression in the mouse brain, provided by the Allen Institute for Brain Science , was used to assess expression patterns of the OCN receptor genes Gpr158 and Gpr37 . ..

Gene Expression:

Article Title: Pharmacological and resting state fMRI reveal Osteocalcin’s effects on mouse brain regions with high Gpr37 and Gpr158 expression
Article Snippet: .. The database for in-situ hybridization whole-brain gene expression in the mouse brain, provided by the Allen Institute for Brain Science , was used to assess expression patterns of the OCN receptor genes Gpr158 and Gpr37 . ..

Article Title: Comprehensive chemoanatomical mapping, and the gonadal regulation, of seven kisspeptin neuronal populations in the mouse brain
Article Snippet: Sagittal and coronal quasi‐serial sections (1 in 4 for SISH and 1 in 7 for DISH, see Figure ) were first examined using a Nikon Eclipse E600 microscope, along with its digital camera for photographic documentation. .. Low‐magnification examination was conducted to localize anatomical structures, referencing Paxinos and Franklin's The Mouse Brain in Stereotaxic Coordinates, in conjunction with the Allen Mouse Brain Atlas ( https://mouse.brain-map.org/ , Allen Institute for Brain Science), specifically consulting the Slc32a1 , Slc17a6 , Tac2 , Pdyn , Esr1 , and Ar gene expression data. .. Once a Kiss1 ‐expressing brain structure was identified, we counted the cells co‐expressing channel‐1 ( Kiss1 ) and one of the six channel‐2 probes, relative to the total channel‐1‐expressing cells in Nissl‐labeled nuclei within on‐screen micrographs taken at 40× magnification (Nikon Eclipse E600 microscope), within an identified anatomical structure.

Expressing:

Article Title: Pharmacological and resting state fMRI reveal Osteocalcin’s effects on mouse brain regions with high Gpr37 and Gpr158 expression
Article Snippet: .. The database for in-situ hybridization whole-brain gene expression in the mouse brain, provided by the Allen Institute for Brain Science , was used to assess expression patterns of the OCN receptor genes Gpr158 and Gpr37 . ..

Injection:

Article Title: Brainwide Projections of Mouse Dopaminergic Zona Incerta Neurons.
Article Snippet: .. Correlation of fiber coverage (in pixels) between injection Case 1 and Case 7 across major brain divisions (see Supporting Information Figure 1) as defined by the Allen Mouse Brain Atlas (Wang et al. 2020a; Allen Institute for Brain Science 2011; a). ..



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Allen Institute for Brain Science whole-brain microarray-based gene expression data
Cell type specific genes demonstrated at mRNA level. (A) Heat map of genes with cell type specific expression. (B) Heat map of selected genes with endothelial or epithelial cell type specific expression. (C) <t>Immunohistochemistry</t> staining of protein C1orf116 across human tissues showing its epithelial cell type specific expression. The panel shows a magnified view (20×) from tissue microarrays.
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Cell type specific genes demonstrated at mRNA level. (A) Heat map of genes with cell type specific expression. (B) Heat map of selected genes with endothelial or epithelial cell type specific expression. (C) Immunohistochemistry staining of protein C1orf116 across human tissues showing its epithelial cell type specific expression. The panel shows a magnified view (20×) from tissue microarrays.

Journal: Nucleic Acids Research

Article Title: A transcriptomic and proteomic map of primary human cell types

doi: 10.1093/nar/gkaf1498

Figure Lengend Snippet: Cell type specific genes demonstrated at mRNA level. (A) Heat map of genes with cell type specific expression. (B) Heat map of selected genes with endothelial or epithelial cell type specific expression. (C) Immunohistochemistry staining of protein C1orf116 across human tissues showing its epithelial cell type specific expression. The panel shows a magnified view (20×) from tissue microarrays.

Article Snippet: The Human Protein Atlas (HPA) project provided a tissue-based map of the human proteome through transcriptomics and tissue microarray-based immunohistochemistry analysis [ , ].

Techniques: Expressing, Immunohistochemistry, Staining