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alpaca snp microarray  (PASCO)

 
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    Structured Review

    PASCO alpaca snp microarray
    Number of scaffold fragment lengths containing one <t> SNP </t> identified in this study and included in the <t> microarray. </t>
    Alpaca Snp Microarray, supplied by PASCO, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+snp+genotype+data/alpaca+snp+microarray/pmc07923280-141-25-3
    Average 90 stars, based on 1 article reviews
    alpaca snp microarray - by Bioz Stars, 2026-11
    90/100 stars

    Images

    1) Product Images from "Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray"

    Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

    Journal: Genes

    doi: 10.3390/genes12020291

    Number of scaffold fragment lengths containing one SNP identified in this study and included in the microarray.
    Figure Legend Snippet: Number of scaffold fragment lengths containing one SNP identified in this study and included in the microarray.

    Techniques Used: Microarray

    Number of SNPs selected for the microarray.
    Figure Legend Snippet: Number of SNPs selected for the microarray.

    Techniques Used: Microarray

    Coverage of the alpaca genome with SNPs included in the microarray.
    Figure Legend Snippet: Coverage of the alpaca genome with SNPs included in the microarray.

    Techniques Used: Microarray

    Population structure based on microarray genotyping (Pacomarca—red, Quimsachata—green, Racco—blue and Gacocen—black).
    Figure Legend Snippet: Population structure based on microarray genotyping (Pacomarca—red, Quimsachata—green, Racco—blue and Gacocen—black).

    Techniques Used: Microarray

    Heat map of genomic relationships among animals based on microarray genotyping Gacocen (bottom left), Pacomarca and Quimsachata (center area) and Racco (top right).
    Figure Legend Snippet: Heat map of genomic relationships among animals based on microarray genotyping Gacocen (bottom left), Pacomarca and Quimsachata (center area) and Racco (top right).

    Techniques Used: Microarray

    Inbreeding coefficient (F) of alpacas genotyped by microarray.
    Figure Legend Snippet: Inbreeding coefficient (F) of alpacas genotyped by microarray.

    Techniques Used: Microarray

    Level of heterozygosity of alpacas genotyped by microarray.
    Figure Legend Snippet: Level of heterozygosity of alpacas genotyped by microarray.

    Techniques Used: Microarray

    Related Articles

    Generated:

    Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray
    Article Snippet: The list of the three sets of SNPs was submitted to NEOGEN (Lincoln, NE, USA) for further evaluation to identify the final set of SNPs for the microarray-based on Affymetrix (CA, USA) SNP evaluation algorithms. .. Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray. .. Genotypes of 68 animals that make up the 30 alpaca trios were analyzed using the Axiom Analysis Suite software (Affymetrix, CA, USA).

    Microarray:

    Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray
    Article Snippet: The list of the three sets of SNPs was submitted to NEOGEN (Lincoln, NE, USA) for further evaluation to identify the final set of SNPs for the microarray-based on Affymetrix (CA, USA) SNP evaluation algorithms. .. Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray. .. Genotypes of 68 animals that make up the 30 alpaca trios were analyzed using the Axiom Analysis Suite software (Affymetrix, CA, USA).



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    Image Search Results


    Mapping of the CFTR locus in a nonconsanguineous CEPH family (Pedigree 3, see the section Methods), using variant data derived either ( A ) from exome sequencing or ( B ) from microarray SNP genotyping (Affymetrix SNP 6.0). Display of Chromosome 7 haplotypes was performed using Phaser [Carr et al., ]. In this display, blue and pink vertical bars denote the haplotypes inherited by the first affected offspring from the father and mother, respectively. The disease locus must be located in a region where all affected individuals share the same combination of maternal (pink) and paternal (blue) haplotypes as this first individual. This is denoted by a purple color in the central vertical bar (region of overlap between the affected paternal and maternal haplotypes). Unaffected offspring should be discordant with their affected siblings at the disease locus (i.e., no purple bar). In this example, the actual position of the CFTR gene is marked by a horizontal red line. It can be seen that the candidate region containing CFTR is considerably smaller in ( B ), due to the superior resolution and distribution of the microarray SNPs.

    Journal: Human Mutation

    Article Title: Rapid Detection of Rare Deleterious Variants by Next Generation Sequencing with Optional Microarray SNP Genotype Data

    doi: 10.1002/humu.22818

    Figure Lengend Snippet: Mapping of the CFTR locus in a nonconsanguineous CEPH family (Pedigree 3, see the section Methods), using variant data derived either ( A ) from exome sequencing or ( B ) from microarray SNP genotyping (Affymetrix SNP 6.0). Display of Chromosome 7 haplotypes was performed using Phaser [Carr et al., ]. In this display, blue and pink vertical bars denote the haplotypes inherited by the first affected offspring from the father and mother, respectively. The disease locus must be located in a region where all affected individuals share the same combination of maternal (pink) and paternal (blue) haplotypes as this first individual. This is denoted by a purple color in the central vertical bar (region of overlap between the affected paternal and maternal haplotypes). Unaffected offspring should be discordant with their affected siblings at the disease locus (i.e., no purple bar). In this example, the actual position of the CFTR gene is marked by a horizontal red line. It can be seen that the candidate region containing CFTR is considerably smaller in ( B ), due to the superior resolution and distribution of the microarray SNPs.

    Article Snippet: Exome variant data were only available for two affected siblings, while Affymetrix SNP 6.0 microarray SNP genotype data were available for a third affected sibling and two unaffected siblings.

    Techniques: Variant Assay, Derivative Assay, Sequencing, Microarray