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Partek microarrays v2 0 open source
KEY RESOURCES TABLE
Microarrays V2 0 Open Source, supplied by Partek, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+hybridization+solution+version+2/0+microarrays+open+source+v2/pmc05683101-979-87-82
Average 86 stars, based on 1 article reviews
microarrays v2 0 open source - by Bioz Stars, 2026-10
86/100 stars

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1) Product Images from "Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction"

Article Title: Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction

Journal: Cell

doi: 10.1016/j.cell.2017.09.018

KEY RESOURCES TABLE
Figure Legend Snippet: KEY RESOURCES TABLE

Techniques Used: Recombinant, Blocking Assay, Magnetic Beads, Nick Translation, Gene Expression, shRNA, Software, Imaging, Expressing

Related Articles

Software:

Article Title: Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction
Article Snippet: Lazar lab ( You et al., 2013 ) N/A Oligonucleotides Cre-specific genotyping (5’-TGC CAC GAC CAA GTG ACA GC-3’, 5’-CCA GGT TAC GGA TAT AGT TCA TG-3’) This paper N/A floxed Hdac3 allele (5’-GCA GTG GTG GTG AAT GGC TT-3’, 5’-CCT GTG TAA CGG GAG CAG AAC TC-3’) This paper N/A qPCR primers, see Table S6 This paper N/A qRT-PCR primers, see Table S6 This paper N/A shRNA oligonucleotides, see Table S6 This paper N/A Recombinant DNA BAC Mouse RP23-310F9 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-196J13 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-80E16 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-187H18 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-207G7 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-150M6 ThermoFisher Cat# RPCI23.C pEGFP-Lap2β Euroscarf.de Cat# {"type":"entrez-protein","attrs":{"text":"P30463","term_id":"231384","term_text":"P30463"}} P30463 pCMX-SMRT M.A. .. Lazar lab N/A pcDNA3 -Hdac3-FLAG P. Gallinari lab N/A pcDNA3 -Hdac3-Y298H–FLAG P. Gallinari lab N/A pFUGW-Hdac3-FLAG This paper N/A pFUGW-Hdac3-Y298H–FLAG This paper N/A pFUGW-Hdac3-FLAG- Lap2β This paper N/A pFUGW-Hdac3-Y298H–FLAG- Lap2β This paper N/A pFUGW-Δ33-70 Hdac3-FLAG This paper N/A psPAX2 Addgene Cat# 12260 pMD2.G Addgene Cat# 12259 FUGW-GFP Addgene Cat# 14883 Software and Algorithms IMARIS 8 Bitplane http://www.bitplane.com/releasenotes/imaris800.aspx Huygenes Professional Scientific Volume Imaging https://svi.nl/HuygensProfessional GraphPad Prism 7 GraphPad Software, Inc. https://www.graphpad.com Affymetrix Command Console and Expression Console ThermoFisher https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html Partek Genomics Suite v6.6 Partek http://www.partek.com/pgs Significance Analysis of Microarrays v2.0 Open Source https://github.com/MikeJSeo/SAM STAR aligner Open Source https://github.com/alexdobin/STAR Picard tools Open Source http://broadinstitute.github.io/picard/ Bamtools v2.4.1 Open Source https://github.com/pezmaster31/bamtools DeepTools2 Open Source https://github.com/fidelram/deepTools Enriched Domain Detector ( Lund et al., 2014 ) https://github.com/CollasLab/edd Bedtools suite v2.26 Open Source https://github.com/arq5x/bedtools2/releases Open in a separate window KEY RESOURCES TABLE Hdac3 retards cardiac progenitor differentiation independent of deacetylase activity Chromatin-nuclear lamina interactions regulate gene accessibility during development Gene accessibility may equate to competence of a stem cell to respond to lineage cues Nuclear architecture provides a distinct layer of gene regulation to impact cell fate ..

Imaging:

Article Title: Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction
Article Snippet: Lazar lab ( You et al., 2013 ) N/A Oligonucleotides Cre-specific genotyping (5’-TGC CAC GAC CAA GTG ACA GC-3’, 5’-CCA GGT TAC GGA TAT AGT TCA TG-3’) This paper N/A floxed Hdac3 allele (5’-GCA GTG GTG GTG AAT GGC TT-3’, 5’-CCT GTG TAA CGG GAG CAG AAC TC-3’) This paper N/A qPCR primers, see Table S6 This paper N/A qRT-PCR primers, see Table S6 This paper N/A shRNA oligonucleotides, see Table S6 This paper N/A Recombinant DNA BAC Mouse RP23-310F9 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-196J13 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-80E16 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-187H18 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-207G7 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-150M6 ThermoFisher Cat# RPCI23.C pEGFP-Lap2β Euroscarf.de Cat# {"type":"entrez-protein","attrs":{"text":"P30463","term_id":"231384","term_text":"P30463"}} P30463 pCMX-SMRT M.A. .. Lazar lab N/A pcDNA3 -Hdac3-FLAG P. Gallinari lab N/A pcDNA3 -Hdac3-Y298H–FLAG P. Gallinari lab N/A pFUGW-Hdac3-FLAG This paper N/A pFUGW-Hdac3-Y298H–FLAG This paper N/A pFUGW-Hdac3-FLAG- Lap2β This paper N/A pFUGW-Hdac3-Y298H–FLAG- Lap2β This paper N/A pFUGW-Δ33-70 Hdac3-FLAG This paper N/A psPAX2 Addgene Cat# 12260 pMD2.G Addgene Cat# 12259 FUGW-GFP Addgene Cat# 14883 Software and Algorithms IMARIS 8 Bitplane http://www.bitplane.com/releasenotes/imaris800.aspx Huygenes Professional Scientific Volume Imaging https://svi.nl/HuygensProfessional GraphPad Prism 7 GraphPad Software, Inc. https://www.graphpad.com Affymetrix Command Console and Expression Console ThermoFisher https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html Partek Genomics Suite v6.6 Partek http://www.partek.com/pgs Significance Analysis of Microarrays v2.0 Open Source https://github.com/MikeJSeo/SAM STAR aligner Open Source https://github.com/alexdobin/STAR Picard tools Open Source http://broadinstitute.github.io/picard/ Bamtools v2.4.1 Open Source https://github.com/pezmaster31/bamtools DeepTools2 Open Source https://github.com/fidelram/deepTools Enriched Domain Detector ( Lund et al., 2014 ) https://github.com/CollasLab/edd Bedtools suite v2.26 Open Source https://github.com/arq5x/bedtools2/releases Open in a separate window KEY RESOURCES TABLE Hdac3 retards cardiac progenitor differentiation independent of deacetylase activity Chromatin-nuclear lamina interactions regulate gene accessibility during development Gene accessibility may equate to competence of a stem cell to respond to lineage cues Nuclear architecture provides a distinct layer of gene regulation to impact cell fate ..

Expressing:

Article Title: Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction
Article Snippet: Lazar lab ( You et al., 2013 ) N/A Oligonucleotides Cre-specific genotyping (5’-TGC CAC GAC CAA GTG ACA GC-3’, 5’-CCA GGT TAC GGA TAT AGT TCA TG-3’) This paper N/A floxed Hdac3 allele (5’-GCA GTG GTG GTG AAT GGC TT-3’, 5’-CCT GTG TAA CGG GAG CAG AAC TC-3’) This paper N/A qPCR primers, see Table S6 This paper N/A qRT-PCR primers, see Table S6 This paper N/A shRNA oligonucleotides, see Table S6 This paper N/A Recombinant DNA BAC Mouse RP23-310F9 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-196J13 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-80E16 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-187H18 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-207G7 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-150M6 ThermoFisher Cat# RPCI23.C pEGFP-Lap2β Euroscarf.de Cat# {"type":"entrez-protein","attrs":{"text":"P30463","term_id":"231384","term_text":"P30463"}} P30463 pCMX-SMRT M.A. .. Lazar lab N/A pcDNA3 -Hdac3-FLAG P. Gallinari lab N/A pcDNA3 -Hdac3-Y298H–FLAG P. Gallinari lab N/A pFUGW-Hdac3-FLAG This paper N/A pFUGW-Hdac3-Y298H–FLAG This paper N/A pFUGW-Hdac3-FLAG- Lap2β This paper N/A pFUGW-Hdac3-Y298H–FLAG- Lap2β This paper N/A pFUGW-Δ33-70 Hdac3-FLAG This paper N/A psPAX2 Addgene Cat# 12260 pMD2.G Addgene Cat# 12259 FUGW-GFP Addgene Cat# 14883 Software and Algorithms IMARIS 8 Bitplane http://www.bitplane.com/releasenotes/imaris800.aspx Huygenes Professional Scientific Volume Imaging https://svi.nl/HuygensProfessional GraphPad Prism 7 GraphPad Software, Inc. https://www.graphpad.com Affymetrix Command Console and Expression Console ThermoFisher https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html Partek Genomics Suite v6.6 Partek http://www.partek.com/pgs Significance Analysis of Microarrays v2.0 Open Source https://github.com/MikeJSeo/SAM STAR aligner Open Source https://github.com/alexdobin/STAR Picard tools Open Source http://broadinstitute.github.io/picard/ Bamtools v2.4.1 Open Source https://github.com/pezmaster31/bamtools DeepTools2 Open Source https://github.com/fidelram/deepTools Enriched Domain Detector ( Lund et al., 2014 ) https://github.com/CollasLab/edd Bedtools suite v2.26 Open Source https://github.com/arq5x/bedtools2/releases Open in a separate window KEY RESOURCES TABLE Hdac3 retards cardiac progenitor differentiation independent of deacetylase activity Chromatin-nuclear lamina interactions regulate gene accessibility during development Gene accessibility may equate to competence of a stem cell to respond to lineage cues Nuclear architecture provides a distinct layer of gene regulation to impact cell fate ..

Histone Deacetylase Assay:

Article Title: Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction
Article Snippet: Lazar lab ( You et al., 2013 ) N/A Oligonucleotides Cre-specific genotyping (5’-TGC CAC GAC CAA GTG ACA GC-3’, 5’-CCA GGT TAC GGA TAT AGT TCA TG-3’) This paper N/A floxed Hdac3 allele (5’-GCA GTG GTG GTG AAT GGC TT-3’, 5’-CCT GTG TAA CGG GAG CAG AAC TC-3’) This paper N/A qPCR primers, see Table S6 This paper N/A qRT-PCR primers, see Table S6 This paper N/A shRNA oligonucleotides, see Table S6 This paper N/A Recombinant DNA BAC Mouse RP23-310F9 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-196J13 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-80E16 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-187H18 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-207G7 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-150M6 ThermoFisher Cat# RPCI23.C pEGFP-Lap2β Euroscarf.de Cat# {"type":"entrez-protein","attrs":{"text":"P30463","term_id":"231384","term_text":"P30463"}} P30463 pCMX-SMRT M.A. .. Lazar lab N/A pcDNA3 -Hdac3-FLAG P. Gallinari lab N/A pcDNA3 -Hdac3-Y298H–FLAG P. Gallinari lab N/A pFUGW-Hdac3-FLAG This paper N/A pFUGW-Hdac3-Y298H–FLAG This paper N/A pFUGW-Hdac3-FLAG- Lap2β This paper N/A pFUGW-Hdac3-Y298H–FLAG- Lap2β This paper N/A pFUGW-Δ33-70 Hdac3-FLAG This paper N/A psPAX2 Addgene Cat# 12260 pMD2.G Addgene Cat# 12259 FUGW-GFP Addgene Cat# 14883 Software and Algorithms IMARIS 8 Bitplane http://www.bitplane.com/releasenotes/imaris800.aspx Huygenes Professional Scientific Volume Imaging https://svi.nl/HuygensProfessional GraphPad Prism 7 GraphPad Software, Inc. https://www.graphpad.com Affymetrix Command Console and Expression Console ThermoFisher https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html Partek Genomics Suite v6.6 Partek http://www.partek.com/pgs Significance Analysis of Microarrays v2.0 Open Source https://github.com/MikeJSeo/SAM STAR aligner Open Source https://github.com/alexdobin/STAR Picard tools Open Source http://broadinstitute.github.io/picard/ Bamtools v2.4.1 Open Source https://github.com/pezmaster31/bamtools DeepTools2 Open Source https://github.com/fidelram/deepTools Enriched Domain Detector ( Lund et al., 2014 ) https://github.com/CollasLab/edd Bedtools suite v2.26 Open Source https://github.com/arq5x/bedtools2/releases Open in a separate window KEY RESOURCES TABLE Hdac3 retards cardiac progenitor differentiation independent of deacetylase activity Chromatin-nuclear lamina interactions regulate gene accessibility during development Gene accessibility may equate to competence of a stem cell to respond to lineage cues Nuclear architecture provides a distinct layer of gene regulation to impact cell fate ..

Activity Assay:

Article Title: Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction
Article Snippet: Lazar lab ( You et al., 2013 ) N/A Oligonucleotides Cre-specific genotyping (5’-TGC CAC GAC CAA GTG ACA GC-3’, 5’-CCA GGT TAC GGA TAT AGT TCA TG-3’) This paper N/A floxed Hdac3 allele (5’-GCA GTG GTG GTG AAT GGC TT-3’, 5’-CCT GTG TAA CGG GAG CAG AAC TC-3’) This paper N/A qPCR primers, see Table S6 This paper N/A qRT-PCR primers, see Table S6 This paper N/A shRNA oligonucleotides, see Table S6 This paper N/A Recombinant DNA BAC Mouse RP23-310F9 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-196J13 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-80E16 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-187H18 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-207G7 ThermoFisher Cat# RPCI23.C BAC Mouse RP23-150M6 ThermoFisher Cat# RPCI23.C pEGFP-Lap2β Euroscarf.de Cat# {"type":"entrez-protein","attrs":{"text":"P30463","term_id":"231384","term_text":"P30463"}} P30463 pCMX-SMRT M.A. .. Lazar lab N/A pcDNA3 -Hdac3-FLAG P. Gallinari lab N/A pcDNA3 -Hdac3-Y298H–FLAG P. Gallinari lab N/A pFUGW-Hdac3-FLAG This paper N/A pFUGW-Hdac3-Y298H–FLAG This paper N/A pFUGW-Hdac3-FLAG- Lap2β This paper N/A pFUGW-Hdac3-Y298H–FLAG- Lap2β This paper N/A pFUGW-Δ33-70 Hdac3-FLAG This paper N/A psPAX2 Addgene Cat# 12260 pMD2.G Addgene Cat# 12259 FUGW-GFP Addgene Cat# 14883 Software and Algorithms IMARIS 8 Bitplane http://www.bitplane.com/releasenotes/imaris800.aspx Huygenes Professional Scientific Volume Imaging https://svi.nl/HuygensProfessional GraphPad Prism 7 GraphPad Software, Inc. https://www.graphpad.com Affymetrix Command Console and Expression Console ThermoFisher https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-genechip-command-console-software.html Partek Genomics Suite v6.6 Partek http://www.partek.com/pgs Significance Analysis of Microarrays v2.0 Open Source https://github.com/MikeJSeo/SAM STAR aligner Open Source https://github.com/alexdobin/STAR Picard tools Open Source http://broadinstitute.github.io/picard/ Bamtools v2.4.1 Open Source https://github.com/pezmaster31/bamtools DeepTools2 Open Source https://github.com/fidelram/deepTools Enriched Domain Detector ( Lund et al., 2014 ) https://github.com/CollasLab/edd Bedtools suite v2.26 Open Source https://github.com/arq5x/bedtools2/releases Open in a separate window KEY RESOURCES TABLE Hdac3 retards cardiac progenitor differentiation independent of deacetylase activity Chromatin-nuclear lamina interactions regulate gene accessibility during development Gene accessibility may equate to competence of a stem cell to respond to lineage cues Nuclear architecture provides a distinct layer of gene regulation to impact cell fate ..



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