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Rosetta Inpharmatics gene expression microarray data set
Gene Expression Microarray Data Set, supplied by Rosetta Inpharmatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+gene+expression+datasets/gene+expression+microarray+data+set/pmc03140630-230-3-16
Average 90 stars, based on 1 article reviews
gene expression microarray data set - by Bioz Stars, 2026-09
90/100 stars

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Gene Expression:

Article Title: MammaPrint 70-gene profile quantifies the likelihood of recurrence for early breast cancer.
Article Snippet: Background: Over the past few years, a variety of multigene expression profiles have been developed to improve prognostication for early stage breast cancer and reduce overtreatment with chemotherapy.. MammaPrint is the only test cleared by the US Food and Drug Administration for the prognostication of early breast cancer.. The MammaPrint assay examines the expression of 70 genes in the primary tumor to stratify patients diagnosed with early stage breast cancer into good and poor prognosis groups.

Article Title: Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance
Article Snippet: .. 3.2 gene expression data analysis system (Rosetta Inpharmatics, Kirkland, WA, USA), using Affymetrix CEL files of array feature intensities and standard deviations as input. ..

Article Title: Notch1 inhibition alters the CD44 hi /CD24 lo population and reduces the formation of brain metastases from breast cancer
Article Snippet: .. We interrogated a comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics, Seattle, WA, USA) prepared by van de Vijver and colleagues, who used it to identify gene expression signatures predictive of outcome. ..

Article Title: ADAM8 expression in invasive breast cancer promotes tumor dissemination and metastasis
Article Snippet: .. A comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics) prepared by van de Vijver and colleagues (van de Vijver et al , ), was used to compare ADAM8 mRNA levels across the different molecular breast cancer subtypes and to assess its correlation with patient outcome. ..

Article Title: Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma.
Article Snippet: Background and aims The incidence of oesophageal adenocarcinoma (OAC) has been increasing rapidly with a dismal survival rate of less than 20%.. Understanding the genomic aberrations and biology of this cancer may enhance disease interventions.. This study aimed to use genome-wide genomic and expression data to enhance the understanding of OAC pathogenesis and identify groups with differential outcomes.

Article Title: Notch1 inhibition alters the CD44 hi /CD24 lo population and reduces the formation of brain metastases from breast cancer
Article Snippet: .. Analysis of a Published Microarray Dataset We interrogated a comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics, Seattle, WA, USA) prepared by van de Vijver and colleagues, who used it to identify gene expression signatures predictive of outcome. ..

Article Title: Mammary differentiation induces expression of Tristetraprolin, a tumor suppressor AU-rich mRNA-binding protein.
Article Snippet: Tristetraprolin (TTP) is a RNA-binding protein that inhibits the expression of pro-inflammatory cytokines and invasiveness-associated genes.. TTP levels are decreased in many different cancer types and it has been proposed that this protein could be used as a prognostic factor in breast cancer.. Here, using publicly available DNA microarray datasets, ‘‘serial analysis of gene expression’’ libraries and qRT-PCR analysis, we determined that TTP mRNA is present in normal breast cells and its levels are significantly decreased in all breast cancer subtypes.

Article Title: Notch1 Inhibition Alters the CD44hi/CD24lo Population and Reduces the Formation of Brain Metastases from Breast Cancer
Article Snippet: .. Analysis of a published microarray data set We interrogated a comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics) prepared by van de Vijver and colleagues, who used it to identify gene expression signatures predictive of outcome. ..

Microarray:

Article Title: Notch1 inhibition alters the CD44 hi /CD24 lo population and reduces the formation of brain metastases from breast cancer
Article Snippet: .. We interrogated a comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics, Seattle, WA, USA) prepared by van de Vijver and colleagues, who used it to identify gene expression signatures predictive of outcome. ..

Article Title: ADAM8 expression in invasive breast cancer promotes tumor dissemination and metastasis
Article Snippet: .. A comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics) prepared by van de Vijver and colleagues (van de Vijver et al , ), was used to compare ADAM8 mRNA levels across the different molecular breast cancer subtypes and to assess its correlation with patient outcome. ..

Article Title: Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma.
Article Snippet: Background and aims The incidence of oesophageal adenocarcinoma (OAC) has been increasing rapidly with a dismal survival rate of less than 20%.. Understanding the genomic aberrations and biology of this cancer may enhance disease interventions.. This study aimed to use genome-wide genomic and expression data to enhance the understanding of OAC pathogenesis and identify groups with differential outcomes.

Article Title: Notch1 inhibition alters the CD44 hi /CD24 lo population and reduces the formation of brain metastases from breast cancer
Article Snippet: .. Analysis of a Published Microarray Dataset We interrogated a comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics, Seattle, WA, USA) prepared by van de Vijver and colleagues, who used it to identify gene expression signatures predictive of outcome. ..

Article Title: Notch1 Inhibition Alters the CD44hi/CD24lo Population and Reduces the Formation of Brain Metastases from Breast Cancer
Article Snippet: .. Analysis of a published microarray data set We interrogated a comprehensive gene expression microarray data set of 295 primary breast tumors (obtained from Rosetta Inpharmatics) prepared by van de Vijver and colleagues, who used it to identify gene expression signatures predictive of outcome. ..



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Image Search Results


Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques: Functional Assay

Journal: bioRxiv

Article Title: Integrative Multi-Omic Profiling of the Human Phosphatome Identifies DUSP15 as a Tumour-Selective Regulator of Immune-Metabolic Reprogramming in Chromophobe Renal Cell Carcinoma

doi: 10.1101/2025.11.15.688610

Figure Lengend Snippet:

Article Snippet: Gene Expression Omnibus (GEO) microarray datasets used for independent validation were obtained from the National Center for Biotechnology Information (NCBI) GEO repository ( https://www.ncbi.nlm.nih.gov/geo/ ) under accession numbers GSE2748, GSE11024, GSE11151, GSE12090, GSE16441, GSE17895, GSE19982, GSE36895, GSE46699, and GSE53757.

Techniques: Expressing, Microarray