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Icoria Inc microarrays experiments and data analyses
Microarrays Experiments And Data Analyses, supplied by Icoria Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+experiments+and+analyses/microarray+design+and+hybridization+assays/pmc02519612-381-19-9
Average 90 stars, based on 1 article reviews
microarrays experiments and data analyses - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Microarray:

Article Title: Hepatic gene expression changes throughout the day in the Fischer rat: implications for toxicogenomic experiments.
Article Snippet: .. Briefly, the RNA samples were frozen at 70 C and shipped to the National Toxicology Program (NTP) repository until transfer to Paradigm Array Labs (Icoria, Inc., RTP, NC) for microarray analysis. ..

Article Title: Gene Expression Profiling of Familial and Sporadic Interstitial Pneumonia
Article Snippet: .. Acknowledgment : The authors thank Ed Lobenhofer, Ken Philips, Yang Qiu, and Pat Hurban (Icoria, Inc.) for assistance in microarray design and hybridization assays; Stavros Garantziotis, David Brass, and Greg Whitehead for help with bleomycin exposure; Dolly Kervitsky (NJMC) for assistance in obtaining clinical data; and Kimwa Walker (NIEHS Immunohistochemistry Core Facility) for performing CXCL12 immunohistochemistry. ..

Article Title: Gene Expression Profiling of Familial and Sporadic Interstitial Pneumonia
Article Snippet: .. The authors thank Ed Lobenhofer, Ken Philips, Yang Qiu, and Pat Hurban (Icoria, Inc.) for assistance in microarray design and hybridization assays; Stavros Garantziotis, David Brass, and Greg Whitehead for help with bleomycin exposure; Dolly Kervitsky (NJMC) for assistance in obtaining clinical data; and Kimwa Walker (NIEHS Immunohistochemistry Core Facility) for performing CXCL12 immunohistochemistry. ..

Article Title: Hepatic gene expression changes throughout the day in the Fischer rat: implications for toxicogenomic experiments.
Article Snippet: .. The authors acknowledge support of the National Center for Toxicogenomics NIEHS, who established and manage the microarray contract, the Battelle Columbus staff, who performed the in-life phase of the study and RNA isolation, the Investigational Genomics Group at Paradigm Array Labs (Icoria, Inc.), who performed the microarray hybridizations, and Sue Edelstein, Image Associates, Inc., who designed and prepared the figures. ..

Article Title: Identification of Primary Transcriptional Regulation of Cell Cycle-Regulated Genes upon DNA Damage
Article Snippet: The quality of all RNA samples was confirmed using an Agilent 2100 Bioanalyzer. .. Microarray analysis was then performed through a contract with Icoria Corporation as follows. .. Briefly, 1 μg of sample RNA and global reference RNA (Stratagene, La Jolla, CA, USA) were converted to cDNA with reverse transcriptase then amplified using T7 RNA polymerase while labeling with either Cy3-dUTP or Cy5-dUTP (Agilent’s Low RNA Input Linear Amplification Kit, Agilent Techologies, USA).

RNA Amplification:

Article Title: ShiA Abrogates the Innate T-Cell Response to Shigella flexneri Infection
Article Snippet: Briefly, RNA was purified from homogenized lung samples with the RNeasy Clean Up kit (QIAGEN, Hilden, Germany) and quality controlled using the Agilent 2100 Bioanalyser (Agilent Technologies, Palo Alto, CA). .. RNA amplification, direct labeling, hybridization, and slide scanning were carried out by Icoria (Research Triangle Park, NC). .. All samples were hybridized to mouse custom microarrays purchased from Agilent Technologies.

Labeling:

Article Title: ShiA Abrogates the Innate T-Cell Response to Shigella flexneri Infection
Article Snippet: Briefly, RNA was purified from homogenized lung samples with the RNeasy Clean Up kit (QIAGEN, Hilden, Germany) and quality controlled using the Agilent 2100 Bioanalyser (Agilent Technologies, Palo Alto, CA). .. RNA amplification, direct labeling, hybridization, and slide scanning were carried out by Icoria (Research Triangle Park, NC). .. All samples were hybridized to mouse custom microarrays purchased from Agilent Technologies.

Hybridization:

Article Title: ShiA Abrogates the Innate T-Cell Response to Shigella flexneri Infection
Article Snippet: Briefly, RNA was purified from homogenized lung samples with the RNeasy Clean Up kit (QIAGEN, Hilden, Germany) and quality controlled using the Agilent 2100 Bioanalyser (Agilent Technologies, Palo Alto, CA). .. RNA amplification, direct labeling, hybridization, and slide scanning were carried out by Icoria (Research Triangle Park, NC). .. All samples were hybridized to mouse custom microarrays purchased from Agilent Technologies.

Article Title: Gene Expression Profiling of Familial and Sporadic Interstitial Pneumonia
Article Snippet: .. Acknowledgment : The authors thank Ed Lobenhofer, Ken Philips, Yang Qiu, and Pat Hurban (Icoria, Inc.) for assistance in microarray design and hybridization assays; Stavros Garantziotis, David Brass, and Greg Whitehead for help with bleomycin exposure; Dolly Kervitsky (NJMC) for assistance in obtaining clinical data; and Kimwa Walker (NIEHS Immunohistochemistry Core Facility) for performing CXCL12 immunohistochemistry. ..

Article Title: Gene Expression Profiling of Familial and Sporadic Interstitial Pneumonia
Article Snippet: .. The authors thank Ed Lobenhofer, Ken Philips, Yang Qiu, and Pat Hurban (Icoria, Inc.) for assistance in microarray design and hybridization assays; Stavros Garantziotis, David Brass, and Greg Whitehead for help with bleomycin exposure; Dolly Kervitsky (NJMC) for assistance in obtaining clinical data; and Kimwa Walker (NIEHS Immunohistochemistry Core Facility) for performing CXCL12 immunohistochemistry. ..

Immunohistochemistry:

Article Title: Gene Expression Profiling of Familial and Sporadic Interstitial Pneumonia
Article Snippet: .. Acknowledgment : The authors thank Ed Lobenhofer, Ken Philips, Yang Qiu, and Pat Hurban (Icoria, Inc.) for assistance in microarray design and hybridization assays; Stavros Garantziotis, David Brass, and Greg Whitehead for help with bleomycin exposure; Dolly Kervitsky (NJMC) for assistance in obtaining clinical data; and Kimwa Walker (NIEHS Immunohistochemistry Core Facility) for performing CXCL12 immunohistochemistry. ..

Article Title: Gene Expression Profiling of Familial and Sporadic Interstitial Pneumonia
Article Snippet: .. The authors thank Ed Lobenhofer, Ken Philips, Yang Qiu, and Pat Hurban (Icoria, Inc.) for assistance in microarray design and hybridization assays; Stavros Garantziotis, David Brass, and Greg Whitehead for help with bleomycin exposure; Dolly Kervitsky (NJMC) for assistance in obtaining clinical data; and Kimwa Walker (NIEHS Immunohistochemistry Core Facility) for performing CXCL12 immunohistochemistry. ..

other:

Article Title: Chemopreventive Doses of Methylselenocysteine Alter Circadian Rhythm in Rat Mammary Tissue
Article Snippet: We thank Edward K. Lobenhofer and the staff at Icoria (now Cogenics, a Division of Clinical Data) for performing microarrays experiments and data analyses.

Isolation:

Article Title: Hepatic gene expression changes throughout the day in the Fischer rat: implications for toxicogenomic experiments.
Article Snippet: .. The authors acknowledge support of the National Center for Toxicogenomics NIEHS, who established and manage the microarray contract, the Battelle Columbus staff, who performed the in-life phase of the study and RNA isolation, the Investigational Genomics Group at Paradigm Array Labs (Icoria, Inc.), who performed the microarray hybridizations, and Sue Edelstein, Image Associates, Inc., who designed and prepared the figures. ..



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