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FIOS Genomics microarray data analysis
Sample–sample network graph of <t>microarray</t> data. Normalized expression data for the top up-and down-regulated genes ( P < 0.05, fold change ≥ 1.2) identified by microarray analysis were visualized using BioLayout Express 3D . Each node represents a different patient sample and edges are coloured to reflect the Pearson correlation that they represent. Red edges indicate high correlation, and blue edges represent low correlation. The same data set is used for each graph. ( A ) unbiased MCL cluster (MCLi = 20). ( B ) Nodes are coloured by gestation and labour status into our four sample groups: TNL ( n = 11), TL ( n = 9), PTNL ( n = 7) and PTL ( n = 8).
Microarray Data Analysis, supplied by FIOS Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Article Title: Immune cell and transcriptomic analysis of the human decidua in term and preterm parturition

Journal: Molecular Human Reproduction

doi: 10.1093/molehr/gax038

Sample–sample network graph of microarray data. Normalized expression data for the top up-and down-regulated genes ( P < 0.05, fold change ≥ 1.2) identified by microarray analysis were visualized using BioLayout Express 3D . Each node represents a different patient sample and edges are coloured to reflect the Pearson correlation that they represent. Red edges indicate high correlation, and blue edges represent low correlation. The same data set is used for each graph. ( A ) unbiased MCL cluster (MCLi = 20). ( B ) Nodes are coloured by gestation and labour status into our four sample groups: TNL ( n = 11), TL ( n = 9), PTNL ( n = 7) and PTL ( n = 8).
Figure Legend Snippet: Sample–sample network graph of microarray data. Normalized expression data for the top up-and down-regulated genes ( P < 0.05, fold change ≥ 1.2) identified by microarray analysis were visualized using BioLayout Express 3D . Each node represents a different patient sample and edges are coloured to reflect the Pearson correlation that they represent. Red edges indicate high correlation, and blue edges represent low correlation. The same data set is used for each graph. ( A ) unbiased MCL cluster (MCLi = 20). ( B ) Nodes are coloured by gestation and labour status into our four sample groups: TNL ( n = 11), TL ( n = 9), PTNL ( n = 7) and PTL ( n = 8).

Techniques Used: Microarray, Expressing

QRT-PCR validations of gene expression changes in TL decidua samples. Decidual expression of selected genes identified as significantly elevated in TL in the microarray analysis was examined across our four sample groups by qRT-PCR [TNL ( n = 11), TL ( n = 9), PTNL ( n = 7) and PTL ( n = 10)]. ( A ) IL-6 expression, ( B ) PTGS2 expression, ( C ) IER3 expression, ( D ) TNFAIP3 expression and ( E ) ATF3 expression. Data are presented as mean fold change ± SEM. Data were analysed by one-way ANOVA followed by Tukey post hoc test. * P < 0.05, *** P < 0.001.
Figure Legend Snippet: QRT-PCR validations of gene expression changes in TL decidua samples. Decidual expression of selected genes identified as significantly elevated in TL in the microarray analysis was examined across our four sample groups by qRT-PCR [TNL ( n = 11), TL ( n = 9), PTNL ( n = 7) and PTL ( n = 10)]. ( A ) IL-6 expression, ( B ) PTGS2 expression, ( C ) IER3 expression, ( D ) TNFAIP3 expression and ( E ) ATF3 expression. Data are presented as mean fold change ± SEM. Data were analysed by one-way ANOVA followed by Tukey post hoc test. * P < 0.05, *** P < 0.001.

Techniques Used: Quantitative RT-PCR, Gene Expression, Expressing, Microarray

QRT-PCR validations of gene expression changes in PTL decidua samples. Decidual gene expression of selected genes identified as significantly elevated in PTL samples in the microarray analysis was examined across our four sample groups by qRT-PCR [TNL ( n = 11), TL ( n = 9), PTNL ( n = 7), PTL ( n = 10)]. ( A ) CXCL8 expression, ( B ) MARCO expression, ( C ) LILRA3 expression, ( D ) FGA expression, ( E ) FGB expression, ( F ) FGG expression, ( G ) PLAT expression and ( H ) PLAU expression. Data are presented as mean fold change ± SEM. Data were analysed by one-way ANOVA followed by Tukey post hoc test. * P < 0.05, ** P < 0.01.
Figure Legend Snippet: QRT-PCR validations of gene expression changes in PTL decidua samples. Decidual gene expression of selected genes identified as significantly elevated in PTL samples in the microarray analysis was examined across our four sample groups by qRT-PCR [TNL ( n = 11), TL ( n = 9), PTNL ( n = 7), PTL ( n = 10)]. ( A ) CXCL8 expression, ( B ) MARCO expression, ( C ) LILRA3 expression, ( D ) FGA expression, ( E ) FGB expression, ( F ) FGG expression, ( G ) PLAT expression and ( H ) PLAU expression. Data are presented as mean fold change ± SEM. Data were analysed by one-way ANOVA followed by Tukey post hoc test. * P < 0.05, ** P < 0.01.

Techniques Used: Quantitative RT-PCR, Gene Expression, Microarray, Expressing

Related Articles

Microarray:

Article Title: Immune cell and transcriptomic analysis of the human decidua in term and preterm parturition
Article Snippet: .. Microarray data analysis was performed by Fios Genomics Ltd (Bioquarter, Edinburgh, UK). ..



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