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avadisarray microarray analysis software  (Strand Life Sciences Private)

 
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    Structured Review

    Strand Life Sciences Private avadisarray microarray analysis software
    Hierarchical clustering of genes regulated by TGF-β in (a) HPL1D and (b) A549 cells . The genes regulated by TGF-β (described in materials and methods) were clustered using <t>Avadis</t> 3.3 Prophetic software. The data was clustered on rows by one way complete linkage – hierarchical clustering using Euclidean distance metric. Microarrays have been done in duplicate on RNAs isolated from cells after 1, 4 and 12 hours of treatment with TGF-β with paired controls at every time point. The dendrogram on the left shows the different clusters into which the TGF-β regulated genes segregated. Red indicates genes induced by TGF-β treatment, green indicates genes repressed by TGF-β treatment and black suggests no regulation.
    Avadisarray Microarray Analysis Software, supplied by Strand Life Sciences Private, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+analysis+software+cambridge/avadisarray+microarray+analysis+software/pmc01858692-436-10-5
    Average 90 stars, based on 1 article reviews
    avadisarray microarray analysis software - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells"

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-8-98

    Hierarchical clustering of genes regulated by TGF-β in (a) HPL1D and (b) A549 cells . The genes regulated by TGF-β (described in materials and methods) were clustered using Avadis 3.3 Prophetic software. The data was clustered on rows by one way complete linkage – hierarchical clustering using Euclidean distance metric. Microarrays have been done in duplicate on RNAs isolated from cells after 1, 4 and 12 hours of treatment with TGF-β with paired controls at every time point. The dendrogram on the left shows the different clusters into which the TGF-β regulated genes segregated. Red indicates genes induced by TGF-β treatment, green indicates genes repressed by TGF-β treatment and black suggests no regulation.
    Figure Legend Snippet: Hierarchical clustering of genes regulated by TGF-β in (a) HPL1D and (b) A549 cells . The genes regulated by TGF-β (described in materials and methods) were clustered using Avadis 3.3 Prophetic software. The data was clustered on rows by one way complete linkage – hierarchical clustering using Euclidean distance metric. Microarrays have been done in duplicate on RNAs isolated from cells after 1, 4 and 12 hours of treatment with TGF-β with paired controls at every time point. The dendrogram on the left shows the different clusters into which the TGF-β regulated genes segregated. Red indicates genes induced by TGF-β treatment, green indicates genes repressed by TGF-β treatment and black suggests no regulation.

    Techniques Used: Software, Isolation

    Comparison of genes regulated by TGF-β in HPL1D and A549 cells . a, Hierarchical clustering of genes regulated by TGF-β in HPL1D and A549 cells Genes regulated by TGF-β in HPL1D and A549 cells were clustered using Avadis 3.3 software. For this comparison only those genes for which expression values are available in both the cell-lines have been considered. The dendrogram on the left shows different clusters of genes segregated according to the pattern of regulation in the two cell-lines. b, Venn diagram showing the genes regulated by TGF-β either common or exclusively to the cell-lines and c , Expanded clusters showing sub-classes of genes regulated by TGF-β in HPL1D and A549 ( derived from Figure ); A, Genes regulated by TGF-β in both HPL1D and A549 (267 genes); B , Genes regulated by TGF-β in A549 and not in HPL1D (1757 genes); C, Genes regulated by TGF-β in HPL1D and not in A549 (733 genes).
    Figure Legend Snippet: Comparison of genes regulated by TGF-β in HPL1D and A549 cells . a, Hierarchical clustering of genes regulated by TGF-β in HPL1D and A549 cells Genes regulated by TGF-β in HPL1D and A549 cells were clustered using Avadis 3.3 software. For this comparison only those genes for which expression values are available in both the cell-lines have been considered. The dendrogram on the left shows different clusters of genes segregated according to the pattern of regulation in the two cell-lines. b, Venn diagram showing the genes regulated by TGF-β either common or exclusively to the cell-lines and c , Expanded clusters showing sub-classes of genes regulated by TGF-β in HPL1D and A549 ( derived from Figure ); A, Genes regulated by TGF-β in both HPL1D and A549 (267 genes); B , Genes regulated by TGF-β in A549 and not in HPL1D (1757 genes); C, Genes regulated by TGF-β in HPL1D and not in A549 (733 genes).

    Techniques Used: Comparison, Software, Expressing, Derivative Assay

    Related Articles

    Microarray:

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells
    Article Snippet: We thank Dr. Ramesh Hariharan, Strand Life Sciences, Bangalore for Avadis microarray analysis software and M/s Unichem Laboratories, IISc for the GRGDNP peptide.

    Software:

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells
    Article Snippet: We thank Dr. Ramesh Hariharan, Strand Life Sciences, Bangalore for Avadis microarray analysis software and M/s Unichem Laboratories, IISc for the GRGDNP peptide.

    Isolation:

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells
    Article Snippet: We thank Dr. Ramesh Hariharan, Strand Life Sciences, Bangalore for Avadis microarray analysis software and M/s Unichem Laboratories, IISc for the GRGDNP peptide.

    Comparison:

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells
    Article Snippet: We thank Dr. Ramesh Hariharan, Strand Life Sciences, Bangalore for Avadis microarray analysis software and M/s Unichem Laboratories, IISc for the GRGDNP peptide.

    Expressing:

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells
    Article Snippet: We thank Dr. Ramesh Hariharan, Strand Life Sciences, Bangalore for Avadis microarray analysis software and M/s Unichem Laboratories, IISc for the GRGDNP peptide.

    Derivative Assay:

    Article Title: Expression profiling of genes regulated by TGF-beta: Differential regulation in normal and tumour cells
    Article Snippet: We thank Dr. Ramesh Hariharan, Strand Life Sciences, Bangalore for Avadis microarray analysis software and M/s Unichem Laboratories, IISc for the GRGDNP peptide.



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