cite seq (10X Genomics)

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10X Genomics cite seq
Cite Seq, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/linux+kernel+or+system+kernel/cite+seq/pm39322753-416-124-90
Average 86 stars, based on 1 article reviews

cite seq - by Bioz Stars, 2026-09

86/100 stars

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Article Title: Multimodal hierarchical classification of CITE-seq data delineates immune cell states across lineages and tissues
Article Snippet: To test landmark registration against other, published CITE-seq normalization techniques, we used four public datasets of CITE-seq performed on healthy PBMCs available from 10x Genomics ( A).

Article Title: Bridging cell morphological behaviors and molecular dynamics in multi-modal spatial omics with MorphLink
Article Snippet: Publicly available data were acquired from the following websites or accession numbers: (1) human bladder tumor 10x Visium data (GEO repository: GSE246011 ); (2) zebrafish melanoma 10x Visium data (GEO repository: GSE159709 ); (3) human tonsil spatial CITE-seq data ( https://www.10xgenomics.com/datasets/gene-protein-expression-library-of-human-tonsil-cytassist-ffpe-2-standard ); (4) human HER2-positive breast tumor spatial transcriptomics data ( https://github.com/almaan/her2st ); (5) human breast tumor 10x Visium data ( https://www.10xgenomics.com/datasets/human-breast-cancer-visium-fresh-frozen-whole-transcriptome-1-standard ); (6) mouse brain 10x Visium data ( https://www.10xgenomics.com/datasets/fresh-frozen-visium-on-cytassist-mouse-brain-probe-based-whole-transcriptome-profiling-2-standard ); (7) mouse embryo 10x Visium data ( https://www.10xgenomics.com/datasets/visium-cytassist-mouse-embryo-11-mm-capture-area-ffpe-2-standard ); (8) human breast tumor H&E images from TCGA data ( https://portal.gdc.cancer.gov/ sample ID: DX1.01FB49CC, DX1.392580F3, DX1.0E26C46D).

Article Title: Increased Autoreactivity and Maturity of EBI2+ Antibody-
Article Snippet: 74 75 10xgenomics scRNA-seq and CITE-seq 76 scRNA-seq: Samples with >80% cell viability were used library preparation.10x 77 Genomics scRNA-seq 3' mRNA and cell surface protein libraries were generated according to 78 the manufacturer’s instructions.

Article Title: LAG3+ CD8+ T cell Subset Boosts Bispecific Antibody Armed Activated T Cell Cytotoxicity Directed at Hormone Receptor+ Breast Cancers
Article Snippet: BATs were then collected and measured using 10X Genomics CITE-seq technology .

Flow Cytometry:

Article Title: Multiomics immune profiling of a patient-relevant orthotopic lung cancer model using SEPARATE-Seq.
Article Snippet: .. We performed a complete multiomics immune profiling of this ORTHO model, using multiparameter flow cytometry, spatial transcriptomics (Vizgen MERSCOPE), and scRNA-/CITE-Seq (10X Genomics) coupled with our newly developed SEPARATE-Seq (Streptavidin Enabled PARtitioning And Tag Evaluation for RNA-Sequencing) technique. ..

Article Title: Personalized, autologous neoantigen-specific T cell therapy in metastatic melanoma: a phase 1 trial.
Article Snippet: Data analysis Statistical analysis of clinical data: SAS Enterpride Guide (version 8.4). .. IHC analysis: Image J (version 1.53k); building TCR vectors: SnapGene (versions 4.2, 4.3, 5.0); alignment and mutational calling, and neoantigen peptide selection; proprietary custom bioinformatics analysis; gene set enrichment analysis: GSEAPy, version 1.1.3; TCR repertoire generation: MiXCR version 4.3.2; alignment of raw scGEX/VDJ/CITE-seq data: Cell Ranger version 6.0.1 (10x genomics); flow cytometry: FlowJo, versions 08, 09, and 10; all other analyses: Python language (version 3.9.15), or GraphPad Prism (version 7.01). ..

Spatial Transcriptomics:

RNA Sequencing:

Single Cell:

Article Title: OmniDoublet: a method for doublet detection in multimodal single-cell sequencing data.
Article Snippet: .. All 10× Genomics Single Cell Multome ATAC + Gene Expression and CITE-seq datasets can be downloaded at https://www.10xgenomics.com/datasets/. ..

Gene Expression:

Immunohistochemistry:

Selection:

Staining:

Article Title: Sex-biased human thymic architecture guides T cell development through spatially defined niches
Article Snippet: .. The BioLegend TotalSeq-C CITE-seq antibody preparation and 10X Genomics CITE-seq cell staining protocols were followed. .. Briefly, prior to the end of the CD45 − sort one vial of TotalSeq-C Human Universal Antibody Cocktail v1.0 (BioLegend, San Diego, CA, USA) was equilibrated to room temperature for 5min and then spun at 10,000g for 30 seconds.

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