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Nonlinear Dynamics proteomics
Proteomics, supplied by Nonlinear Dynamics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/interior-point%2C+non-linear+optimization+algorithm/proteomics/pmc13115156-133-8-9
Average 86 stars, based on 1 article reviews
proteomics - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Tandem Mass Spectroscopy:

Article Title: Identification and Characterization of the Regulatory Particle of Proteasome 19S and Its Correlation with Proteasome 26S in Trophozoites of Naegleria fowleri
Article Snippet: .. The *.raw files containing MS and MS/MS spectra were analyzed and quantified with the software Progenesis QI for Proteomics v4.2 (Nonlinear Dynamics, Newcastle, UK) [22] https://doi.org/10.3390/microorganisms14061277 using a target decoy strategy to detect false positives [23,24] against H. sapiens (downloaded from UniProt on 27 February 2024, UP000005640, 104,557 protein sequences) and N. fowleri (downloaded from UniProt on 15 May 2024, UP000444721, 13,596 protein sequences) *.fasta databases. ..

Software:

Article Title: Identification and Characterization of the Regulatory Particle of Proteasome 19S and Its Correlation with Proteasome 26S in Trophozoites of Naegleria fowleri
Article Snippet: .. The *.raw files containing MS and MS/MS spectra were analyzed and quantified with the software Progenesis QI for Proteomics v4.2 (Nonlinear Dynamics, Newcastle, UK) [22] https://doi.org/10.3390/microorganisms14061277 using a target decoy strategy to detect false positives [23,24] against H. sapiens (downloaded from UniProt on 27 February 2024, UP000005640, 104,557 protein sequences) and N. fowleri (downloaded from UniProt on 15 May 2024, UP000444721, 13,596 protein sequences) *.fasta databases. ..

Article Title: Exploring tear biomarkers with shotgun proteomics for retinoblastoma diagnosis: a pilot study
Article Snippet: .. Generated ∗.raw files were compared and quantified using QI software for proteomics V3.0.3 (Nonlinear Dynamics, Newcastle, UK) based in a target decoy strategy [ , ] against a Homo sapiens database (downloaded from UniProt, UP000005640, 81791 protein sequences, plus ADH1, Uniprot accession: P00330 ). ..

Article Title: Mechanical compression reduces CC16 expression and disrupts metabolic homeostasis in airway epithelial cells.
Article Snippet: Recent evidence suggests that bronchial epithelial cells from individuals with asthma exhibit altered metabolic signatures.. This metabolic shift of energetically demanding cells leads to increased inflammation, excessive reactive oxygen species production (ROS), and oxidative stress—all hallmarks of mitochondrial dysfunction.. While mitochondrial dysfunction has been implicated in disruption in epithelial cell function in asthma, the mechanistic link between bronchoconstriction observed in asthma and these metabolic alterations remains poorly defined.

Article Title: Combined multi-omics and multi-spectral profiling of plasma extracellular vesicles reveals liquid biopsy biomarkers for glioma diagnosis
Article Snippet: .. Raw data was processed using Progenesis QI for Proteomics software (Nonlinear Dynamics, Waters). ..

Generated:

Article Title: Exploring tear biomarkers with shotgun proteomics for retinoblastoma diagnosis: a pilot study
Article Snippet: .. Generated ∗.raw files were compared and quantified using QI software for proteomics V3.0.3 (Nonlinear Dynamics, Newcastle, UK) based in a target decoy strategy [ , ] against a Homo sapiens database (downloaded from UniProt, UP000005640, 81791 protein sequences, plus ADH1, Uniprot accession: P00330 ). ..

Quantitative Proteomics:

Article Title: Galleria mellonella proteomic response to infection with Streptococcus pyogenes .
Article Snippet: .. Raw data processing, protein identification, and label-free quantification were performed using Progenesis QI for proteomics version 4.1 (Nonlinear Dynamics, Newcastle upon Tyne, UK). ..

Article Title: Mechanical compression reduces CC16 expression and disrupts metabolic homeostasis in airway epithelial cells.
Article Snippet: Recent evidence suggests that bronchial epithelial cells from individuals with asthma exhibit altered metabolic signatures.. This metabolic shift of energetically demanding cells leads to increased inflammation, excessive reactive oxygen species production (ROS), and oxidative stress—all hallmarks of mitochondrial dysfunction.. While mitochondrial dysfunction has been implicated in disruption in epithelial cell function in asthma, the mechanistic link between bronchoconstriction observed in asthma and these metabolic alterations remains poorly defined.



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