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AUTODOCK GmbH 3.0.5 lamarckian genetic algorithm (ga)
3.0.5 Lamarckian Genetic Algorithm (Ga), supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genetic+algorithm+(ga)+code/3+0+5+lamarckian+genetic+algorithm++ga+/pm19043224-69-8-7
Average 90 stars, based on 1 article reviews
3.0.5 lamarckian genetic algorithm (ga) - by Bioz Stars, 2026-11
90/100 stars

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Article Title: An abiotic fluorescent probe for cardiac troponin I.
Article Snippet: The first ratiometric fluorescent reporter was designed for the detection of cardiac troponin I (cTnI), a key protein elicited during cardiac muscle cell death.. In designing this abiotic fluorescent probe, docking simulation studies were performed to predict the probe/protein interactions along the solvent exposed regions of cTnI.. Simple cuvette titration experiments in aqueous buffered solution indicate remarkable selectivity for cardiac troponin in the clinically relevant nM region versus skeletal troponin.

Binding Assay:

Article Title: An abiotic fluorescent probe for cardiac troponin I.
Article Snippet: The first ratiometric fluorescent reporter was designed for the detection of cardiac troponin I (cTnI), a key protein elicited during cardiac muscle cell death.. In designing this abiotic fluorescent probe, docking simulation studies were performed to predict the probe/protein interactions along the solvent exposed regions of cTnI.. Simple cuvette titration experiments in aqueous buffered solution indicate remarkable selectivity for cardiac troponin in the clinically relevant nM region versus skeletal troponin.

other:

Article Title: Exploring the potential of 3'-O-carboxy esters of thymidine as inhibitors of ribonuclease A and angiogenin.
Article Snippet: In this study, compounds with a carboxy ester in lieu of the phosphate ester at the 3 0-position have been employed to inhibit the ribonucleolytic activity of ribonuclease A (RNase A).. Phosphates at the 3 0-position of pyrimidine bases are well-known inhibitors of the protein.. We have investigated the inhibition of RNase A by 3 0-O-carboxy esters of thymidine.

Article Title: The binding of 3'-N-piperidine-4-carboxyl-3'-deoxy-ara-uridine to ribonuclease A in the crystal.
Article Snippet: The binding of a moderate inhibitor, 3 0-N-piperidine-4-carboxyl-3 0-deoxy-ara-uridine, to ribonuclease A has been studied by X-ray crystallography at 1.7 Å resolution.. Two inhibitor molecules are bound in the central RNA binding cavity of RNase A exploiting interactions with residues from peripheral binding sites rather than from the active site of the enzyme.. The uracyl moiety of the first inhibitor molecule occupies the purine-preferring site of RNase A, while the rest of the molecule projects to the solvent.

Article Title: Design of novel cell penetrating peptides for the delivery of trehalose into mammalian cells.
Article Snippet: Molecular docking using the AutoDock 4.0 with Lamarckian Genetic Algorithm (LGA) was carried out to investigate the interactions between the designed peptides and trehalose and heparin sulfate.

Article Title: Tanshinone IIA interacts with DNA by minor groove-binding.
Article Snippet: Ligand docking was carried out with the AutoDock 3.0.5 Lamarckian Genetic Algo- rithm (GA).10) DNA was enclosed in the grid defined by AutoGrid as having 0.375 Å spacing.

Article Title: Studies on the interaction of isoxazolcurcumin with calf thymus DNA.
Article Snippet: The interaction of isoxazolcurcumin (IOC), a synthetic derivative of curcumin, with calf thymus-DNA (ct-DNA) has been investigated by V–Vis, fluorescence, circular dichroism spectroscopies, viscosity measurements and docking studies.. From these analyses, the binding constant, umber of binding sites and mode of binding of IOC to ct-DNA has been determined.. The binding constant of IOC to DNA calculated from oth UV–Vis and CD spectra was found to be in the 104 M−1 range.

Article Title: Photoinduced electron transfer between hen egg white lysozyme and anticancer drug menadione
Article Snippet: The protein, hen egg white lysozyme, on photoexcitation undergoes electron transfer with menadione (2-methyl-1,4-naphthoquinone), a widely known anticancer drug.. With the addition of menadione the fluorescence of lysozyme is quenched with the simultaneous formation of an excited state charge-transfer complex in the longer wavelength and a ground state complex.. The former is further evident from laser flash photolysis studies, which indicate a tryptophan to menadione electron transfer.

Docking Assay:

Article Title: Synthesis, photophysical, photochemical, DNA cleavage/binding and cytotoxic properties of pyrene oxime ester conjugates.
Article Snippet: A new series of (E)-pyrene oxime ester conjugates of carboxylic acids including amino acids were synthesized by coupling with an environment sensitive fluorophore 1-acetylpyrene. (E)-Pyrene oxime esters exhibited strong fluorescence properties and interestingly their fluorescence properties were found to be highly sensitive to the surrounding environment.. Direct irradiation of the (E)-pyrene oxime esters by UV light (≥350 nm) resulted in both the photo-Beckmann rearrangement product and products resulting from N–O bond homolysis.. Photoproduct formation and their distribution were found to be solvent dependent.



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