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genechip® command console® (agcc) software program  (Thermo Fisher)


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    Structured Review

    Thermo Fisher genechip® command console® (agcc) software program
    Genechip® Command Console® (Agcc) Software Program, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+command+console+software+program/pmc03674005-157-2-8
    Average 90 stars, based on 1 article reviews
    genechip® command console® (agcc) software program - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Generated:

    Article Title: Enterococcus faecalis Infection Causes Inflammation, Intracellular Oxphos-Independent ROS Production, and DNA Damage in Human Gastric Cancer Cells
    Article Snippet: The arrays were washed and stained with phycoerytrin conjugated streptavidin using a Affymetrix Fluidics Station® 450, and the arrays were scanned in a Affymetrix GeneArray® 2500 scanner to generate fluorescent images, as described in the Affymetrix GeneChip® protocol. .. 24 raw cell intensity files (CEL-files) were generated in the GeneChip® Command Console® Software (AGCC) (Affymetrix). ..

    Article Title: Generation of a Predictive Melphalan Resistance Index by Drug Screen of B-Cell Cancer Cell Lines
    Article Snippet: The quality was checked by Agilent 2100 Bioanalyzer. .. The samples were prepared for hybridization to Affymetrix GeneChip HG-U133 Plus 2.0 arrays after the manufacturer's instruction and .CEL-files were generated by Affymetrix GeneChip Command Console Software (AGCC) and deposited at the NCBI Gene Expression Omnibus (GEO) repository. ..

    Software:

    Article Title: Enterococcus faecalis Infection Causes Inflammation, Intracellular Oxphos-Independent ROS Production, and DNA Damage in Human Gastric Cancer Cells
    Article Snippet: The arrays were washed and stained with phycoerytrin conjugated streptavidin using a Affymetrix Fluidics Station® 450, and the arrays were scanned in a Affymetrix GeneArray® 2500 scanner to generate fluorescent images, as described in the Affymetrix GeneChip® protocol. .. 24 raw cell intensity files (CEL-files) were generated in the GeneChip® Command Console® Software (AGCC) (Affymetrix). ..

    Article Title: Stemness-Attenuating miR-503-3p as a Paracrine Factor to Regulate Growth of Cancer Stem Cells
    Article Snippet: .. An Affymetrix® GeneChip Command Console® software (AGCC) was used for the following data analysis. .. To isolate CD44-positive CSCs, 1 × 10 7 cancer cells were collected during the exponential growth phase and centrifuged at 1000 rpm for 5 min. After centrifugation, pellets were suspended with 160 μ L of DPBS and labeled using 40 μ L of monoclonal anti-CD44 antibody coupled with magnetic beads (Miltenyi Biotec, Germany) in cold MACS running buffer.

    Article Title: Generation of a Predictive Melphalan Resistance Index by Drug Screen of B-Cell Cancer Cell Lines
    Article Snippet: The quality was checked by Agilent 2100 Bioanalyzer. .. The samples were prepared for hybridization to Affymetrix GeneChip HG-U133 Plus 2.0 arrays after the manufacturer's instruction and .CEL-files were generated by Affymetrix GeneChip Command Console Software (AGCC) and deposited at the NCBI Gene Expression Omnibus (GEO) repository. ..

    Article Title: Profile of Expression of Genes Encoding Matrix Metallopeptidase 9 (MMP9), Matrix Metallopeptidase 28 (MMP28) and TIMP Metallopeptidase Inhibitor 1 (TIMP1) in Colorectal Cancer: Assessment of the Role in Diagnosis and Prognostication
    Article Snippet: .. Next, fluorescence intensity of the transcriptomes was read using the GeneChip Scanner 3000 7G and the Affymetrix ® GeneChip ® Command Console ® Software (AGCC) software. ..

    other:

    Article Title: Influence of a Short-Term Iron-Deficient Diet on Hepatic Gene Expression Profiles in Rats
    Article Snippet: The Affymetrix® GeneChip® Command Console® (AGCC) software program (Affymetrix, Santa Clara, CA, USA) was used to convert the array images to the intensity values for each probe (CEL files).

    Article Title: RNA isolation from micro-quantity of articular cartilage for quantitative gene expression by microarray analysis
    Article Snippet: Image processing was performed using the Affymetrix GeneChip Command Console (AGCC) software.

    Article Title: Bcl-xL Silencing Induces Alterations in hsa-miR-608 Expression and Subsequent Cell Death in A549 and SK-LU1 Human Lung Adenocarcinoma Cells
    Article Snippet: GeneChip® miRNA arrays were scanned using GeneChip® Scanner 3000 7G (Affymetrix, USA) and digitized using GeneChip® Operating Software (GCOS) (Affymetrix, USA) and GeneChip® Command Console® Software (AGCC) (Affymetrix, USA) v3.0.1.

    Article Title: Gene expression analysis of a murine model with pulmonary vascular remodeling compared to end-stage IPAH lungs
    Article Snippet: The expression value of the transcript was computed using Affymetrix® GeneChip® Command Console® Software (AGCC) with the MAS5 algorithm [ ], in which the probabilities of the values of each transcript were indicated as the “Flag” Present (p ≼0 to <0.04), Marginal (p ≼0.04 to <0.06), and Absent (p ≼ 0.06 to <0.5).

    Hybridization:

    Article Title: Generation of a Predictive Melphalan Resistance Index by Drug Screen of B-Cell Cancer Cell Lines
    Article Snippet: The quality was checked by Agilent 2100 Bioanalyzer. .. The samples were prepared for hybridization to Affymetrix GeneChip HG-U133 Plus 2.0 arrays after the manufacturer's instruction and .CEL-files were generated by Affymetrix GeneChip Command Console Software (AGCC) and deposited at the NCBI Gene Expression Omnibus (GEO) repository. ..

    Gene Expression:

    Article Title: Generation of a Predictive Melphalan Resistance Index by Drug Screen of B-Cell Cancer Cell Lines
    Article Snippet: The quality was checked by Agilent 2100 Bioanalyzer. .. The samples were prepared for hybridization to Affymetrix GeneChip HG-U133 Plus 2.0 arrays after the manufacturer's instruction and .CEL-files were generated by Affymetrix GeneChip Command Console Software (AGCC) and deposited at the NCBI Gene Expression Omnibus (GEO) repository. ..

    Fluorescence:

    Article Title: Profile of Expression of Genes Encoding Matrix Metallopeptidase 9 (MMP9), Matrix Metallopeptidase 28 (MMP28) and TIMP Metallopeptidase Inhibitor 1 (TIMP1) in Colorectal Cancer: Assessment of the Role in Diagnosis and Prognostication
    Article Snippet: .. Next, fluorescence intensity of the transcriptomes was read using the GeneChip Scanner 3000 7G and the Affymetrix ® GeneChip ® Command Console ® Software (AGCC) software. ..



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