gene-e heatmap generating software (Broad Institute Inc)

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Broad Institute Inc gene-e heatmap generating software
(A) <t>Heatmap</t> of (log(2)) expression. (B) Scatter plot of KIT protein expression determined by RPPA versus dovitinib GI50. (C) Spearman ρ and P values for correlation of all RTKs analyzed by RPPA with dovitinib GI50 response. (D) Spearman ρ and P values for proteins analyzed by RPPA that correlated significantly with dovitinib GI50.

(A) <t>Heatmap</t> of (log(2)) expression. (B) Scatter plot of KIT protein expression determined by RPPA versus dovitinib GI50. (C) Spearman ρ and P values for correlation of all RTKs analyzed by RPPA with dovitinib GI50 response. (D) Spearman ρ and P values for proteins analyzed by RPPA that correlated significantly with dovitinib GI50.

Gene E Heatmap Generating Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gene-e+software+program/expression+heatmap/pmc05215495-370-10-14
Average 90 stars, based on 1 article reviews

gene-e heatmap generating software - by Bioz Stars, 2026-10

90/100 stars

Images

1) Product Images from "The Broad Spectrum Receptor Tyrosine Kinase Inhibitor Dovitinib Suppresses Growth of BRAF Mutant Melanoma Cells in Combination with Other Signaling Pathway Inhibitors"

Article Title: The Broad Spectrum Receptor Tyrosine Kinase Inhibitor Dovitinib Suppresses Growth of BRAF Mutant Melanoma Cells in Combination with Other Signaling Pathway Inhibitors

Journal: Pigment cell & melanoma research

doi: 10.1111/pcmr.12376

(A) Heatmap of (log(2)) expression. (B) Scatter plot of KIT protein expression determined by RPPA versus dovitinib GI50. (C) Spearman ρ and P values for correlation of all RTKs analyzed by RPPA with dovitinib GI50 response. (D) Spearman ρ and P values for proteins analyzed by RPPA that correlated significantly with dovitinib GI50.

Figure Legend Snippet: (A) Heatmap of (log(2)) expression. (B) Scatter plot of KIT protein expression determined by RPPA versus dovitinib GI50. (C) Spearman ρ and P values for correlation of all RTKs analyzed by RPPA with dovitinib GI50 response. (D) Spearman ρ and P values for proteins analyzed by RPPA that correlated significantly with dovitinib GI50.

Techniques Used: Expressing

Genome Wide:

Article Title: Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Article Snippet: .. The genome-wide influence of lncRNAs on splicing was visualized by generating a heatmap depicting the incidence of a gene being alternatively spliced in a lncRNA knockdown using Morpheus [ ], a heatmap generation tool from Broad Institute. ..

Knockdown:

Expressing:

Article Title: Uncommon side effects of common drugs in patients with familial dysautonomia.
Article Snippet: Department of Pediatrics, Hadassah University Hospital, Mount Scopus, Hebrew University-Hadassah Medical School, Jerusalem, Israel Pediatric Endocrinology and Diabetes Unit, Dana-Dwek Children's Hospital, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel, affiliated to the Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel Department of Internal Medicine, Hadassah University Hospital, Mount Scopus, Hebrew University – Hadassah Medical School, Jerusalem, Israel Department of Molecular Biology, Ariel University, Ariel, Israel Adelson School of Medicine, Ariel University, Ariel, Israel Department of Pharmacology and Therapeutics, McGill University, Montreal, Quebec, Canada Gerald Bronfman Department of Oncology, McGill University, Montreal, Quebec, Canada HKG Epitherapeutics, Hong Kong, China

Article Title: Microglial regional heterogeneity and its role in the brain
Article Snippet: Microgliome genes were selected based on several seminal transcriptomic studies [ , , , , , , ] and their RNAseq data in 13 mouse brain regions were retrieved from the human protein atlas. .. An expression heatmap was drawn in Morpheus (Broad Institute). ..

Generated:

Article Title: Mass Spectrometry-Based Atlas of Extracellular Matrix Proteins across 25 Mouse Organs.
Article Snippet: .. A top protein heatmap (Figure 2C) was generated using Morpheus (Broad Institute, https://software. broadinstitute.org/morpheus/). ..

Microarray:

other:

Article Title: The Broad Spectrum Receptor Tyrosine Kinase Inhibitor Dovitinib Suppresses Growth of BRAF Mutant Melanoma Cells in Combination with Other Signaling Pathway Inhibitors
Article Snippet: Heatmaps of log(2) transformed array expression values were generated using GENE-E heatmap generating software (Broad Institute).

Article Title: Switched-memory B cells remodel B cell receptors within secondary germinal centers
Article Snippet: Genes that had a fold change >1.5 (gain or loss) and a p<0.05 for at least one of the transitions were selected, and the fold changes of every transition were displayed in a heatmap (Gene-E, Broad Institute).

Software:

Article Title: SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity
Article Snippet: Statistical significance was assessed using two-sided Mann-Whitney, Wilcoxon signed-rank test or Kruskal-Wallis test with Dunn’s correction for multiple comparisons in Prism 9 (GraphPad) unless stated otherwise. .. Correlations were assessed using two-tailed Spearman’s correlation coefficient ( r s ) and visualized in R v3.6.2 as heatmaps using the corrplot package or using the online Morpheus heatmap software ( https://software.broadinstitute.org/morpheus ; the Broad Institute, MA, USA) and p-values of correlations were corrected for multiple comparisons by FDR in R v3.6.2. ..

Review