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Broad Institute Inc gene-e software version 3.0.204
Gene E Software Version 3.0.204, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gene-e+software+program/gene+e+v+3+0+77/pmc05094584-104-30-34
Average 90 stars, based on 1 article reviews
gene-e software version 3.0.204 - by Bioz Stars, 2026-09
90/100 stars

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Transformation Assay:

Article Title: Profiling proteomic responses to hexokinase-II depletion in terpene-producing Saccharomyces cerevisiae .
Article Snippet: Clustering analysis as performed using Gene-E (version 3.0.215; Broad Institute of MIT nd Harvard) using the Kendall’s tau distance method.

Article Title: Exploring extra dimensions to capture saliva metabolite fingerprints from metabolically healthy and unhealthy obese patients by comprehensive two-dimensional gas chromatography featuring Tandem Ionization mass spectrometry
Article Snippet: Statistical analysis was performed by XLSTAT 2014 (Addinsoft, New York, NY, USA) and heat map visualization by GENE-E version 3.0.77 (Broad Institute, Inc. Cambridge, MA, USA).

Article Title: SETBP1 accumulation induces P53 inhibition and genotoxic stress in neural progenitors underlying neurodegeneration in Schinzel-Giedion syndrome
Article Snippet: Heatmaps were generated with GENE-E (v3.0.215) (GENE-E. Cambridge (MA): The Broad Institute of MIT and Harvard).

Article Title: Exploring extra dimensions to capture saliva metabolite fingerprints from metabolically healthy and unhealthy obese patients by comprehensive two-dimensional gas chromatography featuring Tandem Ionization mass spectrometry
Article Snippet: Statistical analysis was performed by XLSTAT 2014 (Addinsoft, New York,NY,USA) and heatmap visualization byGENE-E version 3.0.77 (Broad Institute, Inc. Cambridge, MA, USA).

Article Title: ADAR1-dependent RNA editing promotes MET and iPSC reprogramming by alleviating ER stress
Article Snippet: GENE-E v3.0.215 , Broad Institute , https://software.broadinstitute.org/GENE-E/.

Article Title: Profiling proteomic responses to hexokinase-II depletion in terpene-producing Saccharomyces cerevisiae
Article Snippet: Clustering analysis was performed using Gene-E (version 3.0.215; Broad Institute of MIT and Harvard) using the Kendall's tau distance method.

Article Title: Transcriptional signature in microglia associated with Aβ plaque phagocytosis
Article Snippet: Samples and proteins were clustered using one minus Spearman correlation, and data expressed as a heatmap of log 2 -transformed normalized fold changes compared to WT microglia using GENE-E software v3.0.215 (Broad Institute).

Article Title: A gene regulatory network to control EMT programs in development and disease
Article Snippet: Hierarchical clustering was performed using GENE-E (version 3.0.215, Broad Institute, Inc.).

Software:

Article Title: Profiling proteomic responses to hexokinase-II depletion in terpene-producing Saccharomyces cerevisiae .
Article Snippet: Clustering analysis as performed using Gene-E (version 3.0.215; Broad Institute of MIT nd Harvard) using the Kendall’s tau distance method.

Article Title: Exploring extra dimensions to capture saliva metabolite fingerprints from metabolically healthy and unhealthy obese patients by comprehensive two-dimensional gas chromatography featuring Tandem Ionization mass spectrometry
Article Snippet: Statistical analysis was performed by XLSTAT 2014 (Addinsoft, New York, NY, USA) and heat map visualization by GENE-E version 3.0.77 (Broad Institute, Inc. Cambridge, MA, USA).

Article Title: SETBP1 accumulation induces P53 inhibition and genotoxic stress in neural progenitors underlying neurodegeneration in Schinzel-Giedion syndrome
Article Snippet: Heatmaps were generated with GENE-E (v3.0.215) (GENE-E. Cambridge (MA): The Broad Institute of MIT and Harvard).

Article Title: Exploring extra dimensions to capture saliva metabolite fingerprints from metabolically healthy and unhealthy obese patients by comprehensive two-dimensional gas chromatography featuring Tandem Ionization mass spectrometry
Article Snippet: Statistical analysis was performed by XLSTAT 2014 (Addinsoft, New York,NY,USA) and heatmap visualization byGENE-E version 3.0.77 (Broad Institute, Inc. Cambridge, MA, USA).

Article Title: ADAR1-dependent RNA editing promotes MET and iPSC reprogramming by alleviating ER stress
Article Snippet: GENE-E v3.0.215 , Broad Institute , https://software.broadinstitute.org/GENE-E/.

Article Title: Profiling proteomic responses to hexokinase-II depletion in terpene-producing Saccharomyces cerevisiae
Article Snippet: Clustering analysis was performed using Gene-E (version 3.0.215; Broad Institute of MIT and Harvard) using the Kendall's tau distance method.

Article Title: Transcriptional signature in microglia associated with Aβ plaque phagocytosis
Article Snippet: Samples and proteins were clustered using one minus Spearman correlation, and data expressed as a heatmap of log 2 -transformed normalized fold changes compared to WT microglia using GENE-E software v3.0.215 (Broad Institute).

Article Title: A gene regulatory network to control EMT programs in development and disease
Article Snippet: Hierarchical clustering was performed using GENE-E (version 3.0.215, Broad Institute, Inc.).



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Broad Institute Inc gene-e software program
Gene E Software Program, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gene-e+software+program/gene+e+software/pm28915237-59-7-10
Average 90 stars, based on 1 article reviews
gene-e software program - by Bioz Stars, 2026-09
90/100 stars
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