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Arraystar inc gene expression microarray
Gene Expression Microarray, supplied by Arraystar inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gene+expression+microarray+analyses/gene+expression+microarray+analysis/pmc05078048-100-17-16
Average 90 stars, based on 1 article reviews
gene expression microarray - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Infection:

Article Title: HCV-Associated Exosomes Upregulate RUNXOR and RUNX1 Expressions to Promote MDSC Expansion and Suppressive Functions through STAT3–miR124 Axis
Article Snippet: .. To determine whether lncRNAs play a role in MDSC expansion during HCV infection, we analyzed the transcripts of lncRNAs and messenger RNAs (mRNAs) in MDSCs isolated from HCV-infected individuals and HS using the Arraystar gene expression array. ..

Isolation:

Article Title: HCV-Associated Exosomes Upregulate RUNXOR and RUNX1 Expressions to Promote MDSC Expansion and Suppressive Functions through STAT3–miR124 Axis
Article Snippet: .. To determine whether lncRNAs play a role in MDSC expansion during HCV infection, we analyzed the transcripts of lncRNAs and messenger RNAs (mRNAs) in MDSCs isolated from HCV-infected individuals and HS using the Arraystar gene expression array. ..

Article Title: Telomeric injury by KML001 in human T cells induces mitochondrial dysfunction through the p53-PGC-1α pathway
Article Snippet: .. CD4 T cells were isolated from HS and cultured with 5 μM KML001 or DPBS control for 48 h. Approximately 6 × 10 6 cells per group were sent to Arraystar Inc. (Rockville, MD) for gene expression analysis. ..

Gene Expression:

Article Title: HCV-Associated Exosomes Upregulate RUNXOR and RUNX1 Expressions to Promote MDSC Expansion and Suppressive Functions through STAT3–miR124 Axis
Article Snippet: .. To determine whether lncRNAs play a role in MDSC expansion during HCV infection, we analyzed the transcripts of lncRNAs and messenger RNAs (mRNAs) in MDSCs isolated from HCV-infected individuals and HS using the Arraystar gene expression array. ..

Article Title: Histone acetyltransferase 7 (KAT7)-dependent intragenic histone acetylation regulates endothelial cell gene regulation
Article Snippet: .. Gene expression microarray analysis Total RNA of HUVEC samples treated with control siRNA or KAT7 siRNAs ( n = 4) were processed by Arraystar Inc. for gene expression microarray analysis. .. The microarray used for sample hybridization is the human LncRNA microarray V3.0, a custom 8 × 60K Agilent array containing 58,944 probes that detect 26,109 mRNA transcripts and 30,586 long non-coding RNA transcripts.

Article Title: Mitochondrial Functions Are Compromised in CD4 T Cells From ART-Controlled PLHIV
Article Snippet: .. The gene expression analysis was performed by Arraystar Inc (Rockville, MD) and the heat map was generated using an online heatmapper software following the Average linkage clustering and Euclidean distance measurement methods ( ). ..

Article Title: Telomeric injury by KML001 in human T cells induces mitochondrial dysfunction through the p53-PGC-1α pathway
Article Snippet: .. CD4 T cells were isolated from HS and cultured with 5 μM KML001 or DPBS control for 48 h. Approximately 6 × 10 6 cells per group were sent to Arraystar Inc. (Rockville, MD) for gene expression analysis. ..

Article Title: Telomere and ATM Dynamics in CD4 T-Cell Depletion in Active and Virus-Suppressed HIV Infections
Article Snippet: .. Gene expression analysis in HIV-infected and 420 uninfected SupT1 cells and primary CD4 T cells was performed by Arraystar (Arraystar Inc, Rockville, MD). ..

Microarray:

Article Title: Histone acetyltransferase 7 (KAT7)-dependent intragenic histone acetylation regulates endothelial cell gene regulation
Article Snippet: .. Gene expression microarray analysis Total RNA of HUVEC samples treated with control siRNA or KAT7 siRNAs ( n = 4) were processed by Arraystar Inc. for gene expression microarray analysis. .. The microarray used for sample hybridization is the human LncRNA microarray V3.0, a custom 8 × 60K Agilent array containing 58,944 probes that detect 26,109 mRNA transcripts and 30,586 long non-coding RNA transcripts.

Control:

Article Title: Histone acetyltransferase 7 (KAT7)-dependent intragenic histone acetylation regulates endothelial cell gene regulation
Article Snippet: .. Gene expression microarray analysis Total RNA of HUVEC samples treated with control siRNA or KAT7 siRNAs ( n = 4) were processed by Arraystar Inc. for gene expression microarray analysis. .. The microarray used for sample hybridization is the human LncRNA microarray V3.0, a custom 8 × 60K Agilent array containing 58,944 probes that detect 26,109 mRNA transcripts and 30,586 long non-coding RNA transcripts.

Article Title: Telomeric injury by KML001 in human T cells induces mitochondrial dysfunction through the p53-PGC-1α pathway
Article Snippet: .. CD4 T cells were isolated from HS and cultured with 5 μM KML001 or DPBS control for 48 h. Approximately 6 × 10 6 cells per group were sent to Arraystar Inc. (Rockville, MD) for gene expression analysis. ..

other:

Article Title: MUC20 regulated by extrachromosomal circular DNA attenuates proteasome inhibitor resistance of multiple myeloma by modulating cuproptosis
Article Snippet: Total RNA was extracted from KAS-6/1 and U266 cells and sent to Aksomics (Shanghai, China) for RNA microarray analysis using the ArrayStar Gene Expression Array (Human, 4 × 44 K, Rockville, MD, USA).

Article Title: Synergistic Effects of Glutamine Deprivation and Metformin in Acute Myeloid Leukemia.
Article Snippet: [Abstract] Objective: The metabolic reprogramming of acute myeloid leukemia (AML) cells is a compensatory adaptation to meet energy requirements for rapid proliferation.. This study aimed to examine the synergistic effects of glutamine deprivation and metformin exposure on AML cells.. Methods: SKM-1 cells (an AML cell line) were subjected to glutamine deprivation and/or treatment with metformin or bis-2-(5-phenylacetamido-1,2,4-thiadiazol-2-yl) ethyl sulfide (BPTES, a glutaminase inhibitor) or cytarabine.

Article Title: Transcriptome analysis of life stages of the house cricket, Acheta domesticus, to improve insect crop production.
Article Snippet: Gene expression in each life stage was analyzed by ArrayStar (DNAStar).

Generated:

Article Title: Mitochondrial Functions Are Compromised in CD4 T Cells From ART-Controlled PLHIV
Article Snippet: .. The gene expression analysis was performed by Arraystar Inc (Rockville, MD) and the heat map was generated using an online heatmapper software following the Average linkage clustering and Euclidean distance measurement methods ( ). ..

Software:

Article Title: Mitochondrial Functions Are Compromised in CD4 T Cells From ART-Controlled PLHIV
Article Snippet: .. The gene expression analysis was performed by Arraystar Inc (Rockville, MD) and the heat map was generated using an online heatmapper software following the Average linkage clustering and Euclidean distance measurement methods ( ). ..

Cell Culture:

Article Title: Telomeric injury by KML001 in human T cells induces mitochondrial dysfunction through the p53-PGC-1α pathway
Article Snippet: .. CD4 T cells were isolated from HS and cultured with 5 μM KML001 or DPBS control for 48 h. Approximately 6 × 10 6 cells per group were sent to Arraystar Inc. (Rockville, MD) for gene expression analysis. ..



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Image Search Results


A hierarchical heatmap comparing global mRNA levels to RISC-IP mRNA levels in U-87 astrocytoma and primary astrocytes. MRNAs included in the heatmap had a fold change >1.4 and were significantly expressed (p<0.01).

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: A hierarchical heatmap comparing global mRNA levels to RISC-IP mRNA levels in U-87 astrocytoma and primary astrocytes. MRNAs included in the heatmap had a fold change >1.4 and were significantly expressed (p<0.01).

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques:

RISC-immunoprecipitated  mRNA  compared to global cellular  mRNA  in U-87 astrocytoma cells and primary  astrocytes  with a fold change > ±1.8 (p <0.01).

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: RISC-immunoprecipitated mRNA compared to global cellular mRNA in U-87 astrocytoma cells and primary astrocytes with a fold change > ±1.8 (p <0.01).

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques: RNA Binding Assay, Sequencing

( A ) MRNA microarray validation with qRT-PCR analysis in grouped RISC-IP U-87 astrocytoma and primary astrocytes samples. Grouped RISC-IP data were compared to the grouped global mRNA from U-87 astrocytoma and primary astrocytes samples. Eight mRNAs were selected from the grouped mRNA microarray dataset and examined by qRT-PCR. Fold change from the mRNA microarray are given by log2 values (left y-axis, light grey bars). Fold change from the qRT-PCR was determined using the 2 -ΔΔCt method and all mRNA expression values were normalized to the beta-actin endogenous control (right y-axis, dark grey bars). Error bars represent the standard deviation of the mean (SD). Importantly, the fold change (y-axis) cannot be directly compared between assays due to differences in calculation methods, but the general trend of up-regulation and down-regulation can be compared. ( B ) MRNAs in RISC compared to the global cellular milieu in U-87 astrocytoma cells. MRNA expression in U-87 astrocytoma cells were normalized to primary astrocytes mRNA expression. All mRNAs had a fold change >2.5 and were significantly expressed (p<0.01). Green and red arrows indicate decreased and increased levels respectively.

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: ( A ) MRNA microarray validation with qRT-PCR analysis in grouped RISC-IP U-87 astrocytoma and primary astrocytes samples. Grouped RISC-IP data were compared to the grouped global mRNA from U-87 astrocytoma and primary astrocytes samples. Eight mRNAs were selected from the grouped mRNA microarray dataset and examined by qRT-PCR. Fold change from the mRNA microarray are given by log2 values (left y-axis, light grey bars). Fold change from the qRT-PCR was determined using the 2 -ΔΔCt method and all mRNA expression values were normalized to the beta-actin endogenous control (right y-axis, dark grey bars). Error bars represent the standard deviation of the mean (SD). Importantly, the fold change (y-axis) cannot be directly compared between assays due to differences in calculation methods, but the general trend of up-regulation and down-regulation can be compared. ( B ) MRNAs in RISC compared to the global cellular milieu in U-87 astrocytoma cells. MRNA expression in U-87 astrocytoma cells were normalized to primary astrocytes mRNA expression. All mRNAs had a fold change >2.5 and were significantly expressed (p<0.01). Green and red arrows indicate decreased and increased levels respectively.

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques: Microarray, Quantitative RT-PCR, Expressing, Standard Deviation

RISC-immunoprecipitated  mRNA  in human U-87 astrocytoma cells compared to RISC-immunoprecipitated  mRNA  in primary human  astrocytes  with a fold change >±2.6 (p <0.01).

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: RISC-immunoprecipitated mRNA in human U-87 astrocytoma cells compared to RISC-immunoprecipitated mRNA in primary human astrocytes with a fold change >±2.6 (p <0.01).

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques:

Bar charts display the relative number (-log(p-value)) of mRNAs with a fold change >2.5 and were considered significant (p<0.01). RISC-IP mRNA were indicated with dark blue bars and the global mRNA were indicated with light blue bars. The threshold (yellow lines) were set at p<0.01 and were calculated using Fischer's exact p-value test using IPA software.

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: Bar charts display the relative number (-log(p-value)) of mRNAs with a fold change >2.5 and were considered significant (p<0.01). RISC-IP mRNA were indicated with dark blue bars and the global mRNA were indicated with light blue bars. The threshold (yellow lines) were set at p<0.01 and were calculated using Fischer's exact p-value test using IPA software.

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques: Software

Bar charts display the relative number (-log(p-value)) of mRNAs with a fold change >2.5 and were considered significant (p<0.01). RISC-IP mRNA were indicated with dark blue bars and the global mRNA were indicated with light blue bars. The threshold (yellow lines) were set at p<0.01 and were calculated using Fischer's exact p-value test using IPA software.

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: Bar charts display the relative number (-log(p-value)) of mRNAs with a fold change >2.5 and were considered significant (p<0.01). RISC-IP mRNA were indicated with dark blue bars and the global mRNA were indicated with light blue bars. The threshold (yellow lines) were set at p<0.01 and were calculated using Fischer's exact p-value test using IPA software.

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques: Software

Specific  messenger RNA  fold change linked to the increased levels of miR-34a in U-87  astrocytoma  RISC.

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: Specific messenger RNA fold change linked to the increased levels of miR-34a in U-87 astrocytoma RISC.

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques: Permeability, Migration, Expressing, Binding Assay, Isolation

Specific  messenger RNA  fold change linked to increased levels of miR-195 in U-87  astrocytoma  RISC.

Journal: PLoS ONE

Article Title: The MicroRNA and MessengerRNA Profile of the RNA-Induced Silencing Complex in Human Primary Astrocyte and Astrocytoma Cells

doi: 10.1371/journal.pone.0013445

Figure Lengend Snippet: Specific messenger RNA fold change linked to increased levels of miR-195 in U-87 astrocytoma RISC.

Article Snippet: Gene expression microarray analyses of global mRNA and RISC-immunoprecipitated mRNA in primary human astrocytes and U-87 astrocytoma cells were outsourced to LC Sciences who are partnered with an Affymetrix® Authorized Service Provider, SeqWright DNA Technology Services (Houston, TX).

Techniques: Transduction

Target recognition by the miR-142-3p/−1 and miR-K10a/+1 5′-isomiRs. ( A , B ) Overlap of binding sites for the miR-142-3p and miR-K10a 5′-isomiRs identified in Ago2-PAR-CLIP data from ( A ) BC-1 and ( B ) BC-3 PEL cell lines . ( C ) Minimum base-pairing required for the miR-142-3p ( upper panel) and miR-K10a ( lower panel) 5′-isomiRs to share canonical binding sites. ( D ) Principal component analysis of microarray data of HEK293T cells transfected with individual 5′-isomiRs. ( E – I ) Sylamer enrichment landscape plots for 7mer 3′-UTR matches to miR-142-3p and miR-K10a 5′-isomiRs using microarray data from 293T cells transfected with individual miRNA mimics ( E – H , this study) or from published microarray data from miR-142 −/− mouse megakaryocytes (GEO data set GSE52141, ). The x -axis represents the ranked gene lists. miR-155 sites (pink and black lines) served as negative controls in addition to all random 7mers (gray). Enrichment plots for hexamer motifs are shown in Supplemental Figure S2.

Journal: RNA

Article Title: Divergent target recognition by coexpressed 5′-isomiRs of miR-142-3p and selective viral mimicry

doi: 10.1261/rna.048876.114

Figure Lengend Snippet: Target recognition by the miR-142-3p/−1 and miR-K10a/+1 5′-isomiRs. ( A , B ) Overlap of binding sites for the miR-142-3p and miR-K10a 5′-isomiRs identified in Ago2-PAR-CLIP data from ( A ) BC-1 and ( B ) BC-3 PEL cell lines . ( C ) Minimum base-pairing required for the miR-142-3p ( upper panel) and miR-K10a ( lower panel) 5′-isomiRs to share canonical binding sites. ( D ) Principal component analysis of microarray data of HEK293T cells transfected with individual 5′-isomiRs. ( E – I ) Sylamer enrichment landscape plots for 7mer 3′-UTR matches to miR-142-3p and miR-K10a 5′-isomiRs using microarray data from 293T cells transfected with individual miRNA mimics ( E – H , this study) or from published microarray data from miR-142 −/− mouse megakaryocytes (GEO data set GSE52141, ). The x -axis represents the ranked gene lists. miR-155 sites (pink and black lines) served as negative controls in addition to all random 7mers (gray). Enrichment plots for hexamer motifs are shown in Supplemental Figure S2.

Article Snippet: For an unbiased comparison of the regulatory potential of these isomiRs, we therefore performed Illumina microarray gene expression analyses of HEK293T cells transfected with mimics of the individual isomiRs.

Techniques: Binding Assay, Microarray, Transfection

Differentially expressed miRNAs in the CNE2-IR and CNE2 cells detected by  microarray.

Journal: PLoS ONE

Article Title: Integrated Analysis of Differential miRNA and mRNA Expression Profiles in Human Radioresistant and Radiosensitive Nasopharyngeal Carcinoma Cells

doi: 10.1371/journal.pone.0087767

Figure Lengend Snippet: Differentially expressed miRNAs in the CNE2-IR and CNE2 cells detected by microarray.

Article Snippet: Gene expression microarray analyses of CNE2-IR and CNE2 mRNAs were outsourced to CapitalBio Corporation.

Techniques: Microarray

Nine miRNAs (A) and eight mRNAs (B) selected from micorarry data were detected by qRT-PCR. Fold changes from the microarray were given by log2 values (right y-axis). Fold changes from the qRT-PCR were determined using the 2 −ΔΔCt method and normalized to the endogenous control GAPDH or U6 (left y-axis). Error bars represent the standard deviation of the mean (SD). Importantly, the fold changes (y-axis) cannot be directly compared between assays due to differences in calculation methods, but the general trend of upregulation and downregulation can be compared. (C) The nine miRNA-target gene pairs with an inverse correlation of expression identified by microarray analysis and validated by qRT-PCR.

Journal: PLoS ONE

Article Title: Integrated Analysis of Differential miRNA and mRNA Expression Profiles in Human Radioresistant and Radiosensitive Nasopharyngeal Carcinoma Cells

doi: 10.1371/journal.pone.0087767

Figure Lengend Snippet: Nine miRNAs (A) and eight mRNAs (B) selected from micorarry data were detected by qRT-PCR. Fold changes from the microarray were given by log2 values (right y-axis). Fold changes from the qRT-PCR were determined using the 2 −ΔΔCt method and normalized to the endogenous control GAPDH or U6 (left y-axis). Error bars represent the standard deviation of the mean (SD). Importantly, the fold changes (y-axis) cannot be directly compared between assays due to differences in calculation methods, but the general trend of upregulation and downregulation can be compared. (C) The nine miRNA-target gene pairs with an inverse correlation of expression identified by microarray analysis and validated by qRT-PCR.

Article Snippet: Gene expression microarray analyses of CNE2-IR and CNE2 mRNAs were outsourced to CapitalBio Corporation.

Techniques: Quantitative RT-PCR, Microarray, Control, Standard Deviation, Expressing