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featurecounts function of rsubread package  (RStudio)

 
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    RStudio featurecounts function of rsubread package
    Featurecounts Function Of Rsubread Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/featurecount+function/rsubread/pm38386032-72-4-8
    Average 90 stars, based on 1 article reviews
    featurecounts function of rsubread package - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Multiple pals gene modules control a balance between immunity and development in Caenorhabditis elegans
    Article Snippet: Reads were mapped to C . elegans WS235 genome using Rsubread in RStudio.

    Article Title: CryoGrid-PIXUL-RNA: high throughput RNA isolation platform for tissue transcript analysis.
    Article Snippet: Reads were aligned and counted in RStudio using the Bioconductor ‘RSubread’ (version 2.8.2) package [30].

    Article Title: Denervation Drives YAP/TAZ Activation in Muscular Fibro/Adipogenic Progenitors.
    Article Snippet: Mapped read files were converted to reads per annotated gene counts using version 108 of GRCm39 for transcriptome annotation and processed in R for Mac OS X GUI (v.4.2.1), RStudio (v.2022.07.1), and the R package Rsubread (v.2.12.0).

    Article Title: Multiple pals gene modules control a balance between immunity and development in Caenorhabditis elegans.
    Article Snippet: Reads were mapped to C. elegans WS235 genome using Rsubread in RStudio.

    Article Title: The Discovery and Characterization of Conserved and Novel miRNAs in the Different Developmental Stages and Organs of Pikeperch ( Sander lucioperca ).
    Article Snippet: Next, the STAR mapping BAM output files were processed further in R-Studio by using the featureCounts function from the Rsubread package (v.1.34.2) to produce count matrices.

    Article Title: Comparative transcriptomic analysis of circulating endothelial cells in sickle cell stroke.
    Article Snippet: Ischemic stroke (IS) is one of the most impairing complications of sickle cell anemia (SCA), responsible for 20% of mortality in patients.. Rheological alterations, adhesive properties of sickle reticulocytes, leukocyte adhesion, inflammation and endothelial dysfunction are related to the vasculopathy observed prior to ischemic events.. The role of the vascular endothelium in this complex cascade of mechanisms is emphasized, as well as in the process of ischemia-induced repair and neovascularization.

    Sequencing:

    Article Title: Adenosine deaminase and deoxyadenosine regulate intracellular immune response in C. elegans
    Article Snippet: .. Next, sequencing reads for adah-1 , pnp-1 , or L4440 samples were mapped to the C. elegans genome (Wormbase WS235 release) in Rstudio using Rsubread and then quantified using Featurecounts, with the Galaxy web platform (public server at https://usegalaxy.org/ ). ..

    Article Title: A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C . elegans
    Article Snippet: Sequencing was performed on a NovaSeq 6000 sequencer (Illumina Inc., San Diego, CA). .. Sequencing reads were aligned to WS235 in RStudio using Rsubread and were quantified using Featurecounts ( ). ..



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