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BioRap Technologies Ltd microarray expression profiling
Microarray Expression Profiling, supplied by BioRap Technologies Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/expression+microarrays/microarray+expression+profiling/pm28619728-84-0-10
Average 90 stars, based on 1 article reviews
microarray expression profiling - by Bioz Stars, 2026-10
90/100 stars

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Microarray:

Article Title: Activated Notch signaling cascade is correlated with stem cell differentiation toward absorptive progenitors after massive small bowel resection in a rat.
Article Snippet: Genome sequencing library preparations Illumina's Digital Gene Expression (DGE) analysis using Illumina Rat Quad BeadChips was used to determine NOTC-related gene expression profiling in jejunum and ileum. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion). .. Total RNA was isolated using a TRIzol (Invitrogen, Carlsbad, CA) extraction protocol with chloroform interphase separation, isopropanol precipitation, and ethanol wash steps.

Article Title: Gene expression dynamics following mithramycin treatment: A possible model for post-chemotherapy cognitive impairment.
Article Snippet: Chemotherapeutic agents are associated with cognitive impairments in 17%75% of the noncentral nervous system (nonCNS) cancer survivors.1 Cognitive impairments include memory disturbance, concentration difficulties and executive function deficits.2 These impairments affect basic everyday cognitive activities and have an overall negative influence on patients’ quality of life.3 Commonly, these patients are also suffering from secondary depression and anxiety, probably due to loss of their previous abilities.4 Children are particularly sensitive and exhibit cognitive deficits years after the chemotherapeutic treatment ended.5 There are objective obstacles in assessing the direct contribution of chemotherapy to cognitive impairments, due to a possible overlap with disease and/or nonchemotherapeutic treatment effects on brain.. This includes cytokine effects, paraneoplastic syndromes, surgery and radiation.6 In most cases there is a lack of records on cognitive functioning before treatment.7 However, brain imaging before and after treatment shows a reduction in the volume of brain areas involved in memory and cognition.7 For example, years after treatment, a lower responsiveness is observed in the frontal cortex and the parahippocampus during the Received: 8 January 2018 | Revised: 23 April 2018 | Accepted: 11 May 2018 DOI: 10.1111/1440-1681.12975

Article Title: The role of intermediate filaments in maintaining integrity and function of intestinal epithelial cells after massive bowel resection in a rat.
Article Snippet: increase in cell apoptosis.. From the total number of 20,000 probes, 16 cytoskeleton-related genes were investigated.. Between these genes, only myosin and tubulin levels were upregulated in SBS compared to sham animals.

Article Title: Cardiac Fibroblast-Induced Pluripotent Stem Cell-Derived Exosomes as a Potential Therapeutic Mean for Heart Failure
Article Snippet: Alkaline phosphatase (AP) was stained using the alkaline phosphatase detection kit (Millipore, Burlington, MS, USA) as per the manufacturer’s instruction [ ]. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion, Haifa, Israel). ..

Article Title: The role of branched chain amino acid and tryptophan metabolism in rat's behavioral diversity: Intertwined peripheral and brain effects.
Article Snippet: Laboratory of Psychobiology, Department of Psychiatry, Rambam Medical Center, Tel Aviv University, Tel Aviv, Israel The Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel Behavioral Neuroscience Lab, The Emek Medical Center Afula, Technion-IIT, Haifa, Israel B. Rappaport Faculty of Medicine, Technion-IIT, Haifa, Israel The Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel

Expressing:

Article Title: Activated Notch signaling cascade is correlated with stem cell differentiation toward absorptive progenitors after massive small bowel resection in a rat.
Article Snippet: Genome sequencing library preparations Illumina's Digital Gene Expression (DGE) analysis using Illumina Rat Quad BeadChips was used to determine NOTC-related gene expression profiling in jejunum and ileum. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion). .. Total RNA was isolated using a TRIzol (Invitrogen, Carlsbad, CA) extraction protocol with chloroform interphase separation, isopropanol precipitation, and ethanol wash steps.

Article Title: Gene expression dynamics following mithramycin treatment: A possible model for post-chemotherapy cognitive impairment.
Article Snippet: Chemotherapeutic agents are associated with cognitive impairments in 17%75% of the noncentral nervous system (nonCNS) cancer survivors.1 Cognitive impairments include memory disturbance, concentration difficulties and executive function deficits.2 These impairments affect basic everyday cognitive activities and have an overall negative influence on patients’ quality of life.3 Commonly, these patients are also suffering from secondary depression and anxiety, probably due to loss of their previous abilities.4 Children are particularly sensitive and exhibit cognitive deficits years after the chemotherapeutic treatment ended.5 There are objective obstacles in assessing the direct contribution of chemotherapy to cognitive impairments, due to a possible overlap with disease and/or nonchemotherapeutic treatment effects on brain.. This includes cytokine effects, paraneoplastic syndromes, surgery and radiation.6 In most cases there is a lack of records on cognitive functioning before treatment.7 However, brain imaging before and after treatment shows a reduction in the volume of brain areas involved in memory and cognition.7 For example, years after treatment, a lower responsiveness is observed in the frontal cortex and the parahippocampus during the Received: 8 January 2018 | Revised: 23 April 2018 | Accepted: 11 May 2018 DOI: 10.1111/1440-1681.12975

Article Title: The role of intermediate filaments in maintaining integrity and function of intestinal epithelial cells after massive bowel resection in a rat.
Article Snippet: increase in cell apoptosis.. From the total number of 20,000 probes, 16 cytoskeleton-related genes were investigated.. Between these genes, only myosin and tubulin levels were upregulated in SBS compared to sham animals.

Article Title: Cardiac Fibroblast-Induced Pluripotent Stem Cell-Derived Exosomes as a Potential Therapeutic Mean for Heart Failure
Article Snippet: Alkaline phosphatase (AP) was stained using the alkaline phosphatase detection kit (Millipore, Burlington, MS, USA) as per the manufacturer’s instruction [ ]. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion, Haifa, Israel). ..

Article Title: The role of branched chain amino acid and tryptophan metabolism in rat's behavioral diversity: Intertwined peripheral and brain effects.
Article Snippet: Laboratory of Psychobiology, Department of Psychiatry, Rambam Medical Center, Tel Aviv University, Tel Aviv, Israel The Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel Behavioral Neuroscience Lab, The Emek Medical Center Afula, Technion-IIT, Haifa, Israel B. Rappaport Faculty of Medicine, Technion-IIT, Haifa, Israel The Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel

Sequencing:

Article Title: The role of intermediate filaments in maintaining integrity and function of intestinal epithelial cells after massive bowel resection in a rat.
Article Snippet: increase in cell apoptosis.. From the total number of 20,000 probes, 16 cytoskeleton-related genes were investigated.. Between these genes, only myosin and tubulin levels were upregulated in SBS compared to sham animals.



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Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques: Functional Assay