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pmscv puro ires gfp vector  (Addgene inc)


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    Structured Review

    Addgene inc pmscv puro ires gfp vector
    Pmscv Puro Ires Gfp Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 77 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/empty+vector/pMSCV+PIG+(Puro+IRES+GFP+empty+vector)+(Plasmid+%2321654)/us09845471-459-17-22
    Average 93 stars, based on 77 article reviews
    pmscv puro ires gfp vector - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Cloning:

    Article Title: PRPS activity tunes redox homeostasis in Myc-driven lymphoma
    Article Snippet: .. Prps1 cDNA (Horizon Discovery #MMM1013-202859297) and Prps2 cDNA (previously described [ ]) were subcloned into the pMSCV_PIG cloning vector (Addgene #21654 [ ]) using the SalI and EcoRI restriction sites. .. The blasticidin expression cassette from pWZL_Blast_myc (Addgene #10674 [ ]) was subcloned into FUGW (Addgene #14883 [ ]) to replace bleomycin.

    Transformation Assay:

    Article Title: A TP53 Intron-Derived Peptide Promotes Tumor Survival
    Article Snippet: For the generation of shRNA-mediated stable IDP knockdown, pTRC2 vector was first edited to have a KpnI site and then digested with KpnI and EcoRI. shRNA oligonucleotides were obtained from Intergrated DNA Technologies (IDT, USA), annealed, and ligated with vector using T4 ligase. .. After transformation, clones were screened through DNA extraction and Sanger Sequencing. shRNA oligonucleotides can be found in Table S1. pMSCV-PIG was obtained from Addgene (#21654). ..

    Clone Assay:

    Article Title: A TP53 Intron-Derived Peptide Promotes Tumor Survival
    Article Snippet: For the generation of shRNA-mediated stable IDP knockdown, pTRC2 vector was first edited to have a KpnI site and then digested with KpnI and EcoRI. shRNA oligonucleotides were obtained from Intergrated DNA Technologies (IDT, USA), annealed, and ligated with vector using T4 ligase. .. After transformation, clones were screened through DNA extraction and Sanger Sequencing. shRNA oligonucleotides can be found in Table S1. pMSCV-PIG was obtained from Addgene (#21654). ..

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Article Title: Mitochondria protect against an intracellular pathogen by restricting access to folate
    Article Snippet: .. Human MTHFD2 cDNA amplified from ES-2 cells was cloned into pMSCV PIG (puro IRES GFP; Addgene #21654) at the XhoI and EcoRI sites. ..

    Article Title: A Phosphoinositide Interacting Protein Coordinates Stress Precursor Activities
    Article Snippet: .. HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains (S14ΔCS) ( Ray et al ., 2022 ) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Article Title: The Regulation of COX-2, ABCA1 and ABCG1 by the lncRNA PACERR links the inflammatory response and cholesterol homeostasis
    Article Snippet: Cells stably expressing the shRNAs were selected by using 5 μg ml −1 puromycin (Thermo Fisher Scientific). .. To create PACERR-overexpressing cell lines, PACERR gene block from IDT was cloned into the pMSCV-PIG vector (Addgene, 21654) and transfected into HEK293T cells with packaging vectors pCMV-VSV-G (Addgene, 8454) and pCMV-Gag-Pol (Cell Biolabs, RV-111). .. After 48 h, the culture medium was isolated and used to transduce THP-1 cells were selected with puromycin (5 μg ml −1 , Thermo Fisher Scientific).

    Article Title: A Stress-Induced PI3P Complex Controls Cell Autophagy in Erythroid Precursors
    Article Snippet: .. Plasmid Constructs 61 HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping 62 protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains 63 (S14ΔCS) (Ray et al., 2022) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP 64 (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    DNA Extraction:

    Article Title: A TP53 Intron-Derived Peptide Promotes Tumor Survival
    Article Snippet: For the generation of shRNA-mediated stable IDP knockdown, pTRC2 vector was first edited to have a KpnI site and then digested with KpnI and EcoRI. shRNA oligonucleotides were obtained from Intergrated DNA Technologies (IDT, USA), annealed, and ligated with vector using T4 ligase. .. After transformation, clones were screened through DNA extraction and Sanger Sequencing. shRNA oligonucleotides can be found in Table S1. pMSCV-PIG was obtained from Addgene (#21654). ..

    Sequencing:

    Article Title: A TP53 Intron-Derived Peptide Promotes Tumor Survival
    Article Snippet: For the generation of shRNA-mediated stable IDP knockdown, pTRC2 vector was first edited to have a KpnI site and then digested with KpnI and EcoRI. shRNA oligonucleotides were obtained from Intergrated DNA Technologies (IDT, USA), annealed, and ligated with vector using T4 ligase. .. After transformation, clones were screened through DNA extraction and Sanger Sequencing. shRNA oligonucleotides can be found in Table S1. pMSCV-PIG was obtained from Addgene (#21654). ..

    Article Title: EMP1 safeguards hematopoietic stem cells by suppressing sphingolipid metabolism and alleviating endoplasmic reticulum stress
    Article Snippet: C57BL/6J mouse Cyagen, China NA CD45.1 mouse Cyagen, China NA Tie2-Cre mouse Cyagen, China NA Mx1-Cre mouse Cyagen, China NA Emp1fl/+ mouse Cyagen, China TOS170110KY1 .. shRNA targeting sequence: human EMP1-1#: CCGGCGCTACTGTTATTATGCTATTCTCGAGAATAGCATAATAACAGTAGC GTTTTTG Tsingke, China N/A shRNA targeting sequence: human EMP1-2#: CCGGCCACATCGCTACTGTTATTATCTCGAGATAATAACAGTAGCGATGTG GTTTTTG Tsingke, China N/A Primers for Real-time PCR, see Supplementary Table S5 Tsingke, China N/A Recombinant DNA pCMV-C-EGFP Beyotime D2626 pCMV-Emp1-EGFP Tsingke, China N/A pMSCV-GFP Addgene #21654 pMSCV-HA-Emp1 This paper N/A pMSCV-Flag-Cers2 This paper N/A pMSCV-Flag-mutCers2 This paper N/A pLKO.1-puro-CMV-GFP This paper N/A pLKO-shEMP1 This paper N/A pxPAX2 Addgene #12260 pMD2.G Addgene #12259 pCL-Eco Addgene #12371 Software and Algorithms GraphPad Prism 9 GraphPad Software https://www.graphpad .com/ FlowJo software_V10 FlowJo https://www.flowjo.co m/ GSEA_4.1.0 GSEA https://www.gseamsigdb.org/gsea/inde x.jsp PyMOL 2.6 DeLano Scientific LLC https://www.pymol.or g/ ..

    shRNA:

    Article Title: A TP53 Intron-Derived Peptide Promotes Tumor Survival
    Article Snippet: For the generation of shRNA-mediated stable IDP knockdown, pTRC2 vector was first edited to have a KpnI site and then digested with KpnI and EcoRI. shRNA oligonucleotides were obtained from Intergrated DNA Technologies (IDT, USA), annealed, and ligated with vector using T4 ligase. .. After transformation, clones were screened through DNA extraction and Sanger Sequencing. shRNA oligonucleotides can be found in Table S1. pMSCV-PIG was obtained from Addgene (#21654). ..

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Construct:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Article Title: A Stress-Induced PI3P Complex Controls Cell Autophagy in Erythroid Precursors
    Article Snippet: .. Plasmid Constructs 61 HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping 62 protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains 63 (S14ΔCS) (Ray et al., 2022) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP 64 (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Knockdown:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Control:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Luciferase:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Synthesized:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Expressing:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Article Title: A Phosphoinositide Interacting Protein Coordinates Stress Precursor Activities
    Article Snippet: .. HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains (S14ΔCS) ( Ray et al ., 2022 ) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Article Title: A Stress-Induced PI3P Complex Controls Cell Autophagy in Erythroid Precursors
    Article Snippet: .. Plasmid Constructs 61 HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping 62 protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains 63 (S14ΔCS) (Ray et al., 2022) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP 64 (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Plasmid Preparation:

    Article Title: The SAMD1 transcription factor coordinates hematopoietic lineage differentiation and H3K4 methylation status
    Article Snippet: Mice C57BL/6 congenic CD45.1 wild-type mice and C57BL/6 wild-type mice were obtained from Jackson labs. All mouse experiments were approved by the Institutional Animal Care and Use Committee of the University of Nebraska Medical Center in accordance with National Institutes of Health guidelines. .. Plasmids, shRNA, and single-guide constructs Samd1 knockdown shRNAs targeting exon 2 and a control shRNA targeting the luciferase gene were synthesized as a 97-nt ultramer (Sigma) containing 22-mer reverted repeats, a 19-nt spacer, and restriction sites BglII/XhoI. shRNAs were cloned into the mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654). .. SAMD1 single-guide RNAs targeting exon 2 and a non-targeting scramble control containing a 20 base pair target sequence and BsmbI restriction sites were synthesized and lentiCRISPR v2 (Addgene #52961).

    Article Title: A Phosphoinositide Interacting Protein Coordinates Stress Precursor Activities
    Article Snippet: .. HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains (S14ΔCS) ( Ray et al ., 2022 ) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Article Title: The Regulation of COX-2, ABCA1 and ABCG1 by the lncRNA PACERR links the inflammatory response and cholesterol homeostasis
    Article Snippet: Cells stably expressing the shRNAs were selected by using 5 μg ml −1 puromycin (Thermo Fisher Scientific). .. To create PACERR-overexpressing cell lines, PACERR gene block from IDT was cloned into the pMSCV-PIG vector (Addgene, 21654) and transfected into HEK293T cells with packaging vectors pCMV-VSV-G (Addgene, 8454) and pCMV-Gag-Pol (Cell Biolabs, RV-111). .. After 48 h, the culture medium was isolated and used to transduce THP-1 cells were selected with puromycin (5 μg ml −1 , Thermo Fisher Scientific).

    Article Title: A Stress-Induced PI3P Complex Controls Cell Autophagy in Erythroid Precursors
    Article Snippet: .. Plasmid Constructs 61 HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping 62 protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains 63 (S14ΔCS) (Ray et al., 2022) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP 64 (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Amplification:

    Article Title: Mitochondria protect against an intracellular pathogen by restricting access to folate
    Article Snippet: .. Human MTHFD2 cDNA amplified from ES-2 cells was cloned into pMSCV PIG (puro IRES GFP; Addgene #21654) at the XhoI and EcoRI sites. ..

    Real-time Polymerase Chain Reaction:

    Article Title: EMP1 safeguards hematopoietic stem cells by suppressing sphingolipid metabolism and alleviating endoplasmic reticulum stress
    Article Snippet: C57BL/6J mouse Cyagen, China NA CD45.1 mouse Cyagen, China NA Tie2-Cre mouse Cyagen, China NA Mx1-Cre mouse Cyagen, China NA Emp1fl/+ mouse Cyagen, China TOS170110KY1 .. shRNA targeting sequence: human EMP1-1#: CCGGCGCTACTGTTATTATGCTATTCTCGAGAATAGCATAATAACAGTAGC GTTTTTG Tsingke, China N/A shRNA targeting sequence: human EMP1-2#: CCGGCCACATCGCTACTGTTATTATCTCGAGATAATAACAGTAGCGATGTG GTTTTTG Tsingke, China N/A Primers for Real-time PCR, see Supplementary Table S5 Tsingke, China N/A Recombinant DNA pCMV-C-EGFP Beyotime D2626 pCMV-Emp1-EGFP Tsingke, China N/A pMSCV-GFP Addgene #21654 pMSCV-HA-Emp1 This paper N/A pMSCV-Flag-Cers2 This paper N/A pMSCV-Flag-mutCers2 This paper N/A pLKO.1-puro-CMV-GFP This paper N/A pLKO-shEMP1 This paper N/A pxPAX2 Addgene #12260 pMD2.G Addgene #12259 pCL-Eco Addgene #12371 Software and Algorithms GraphPad Prism 9 GraphPad Software https://www.graphpad .com/ FlowJo software_V10 FlowJo https://www.flowjo.co m/ GSEA_4.1.0 GSEA https://www.gseamsigdb.org/gsea/inde x.jsp PyMOL 2.6 DeLano Scientific LLC https://www.pymol.or g/ ..

    Recombinant:

    Article Title: EMP1 safeguards hematopoietic stem cells by suppressing sphingolipid metabolism and alleviating endoplasmic reticulum stress
    Article Snippet: C57BL/6J mouse Cyagen, China NA CD45.1 mouse Cyagen, China NA Tie2-Cre mouse Cyagen, China NA Mx1-Cre mouse Cyagen, China NA Emp1fl/+ mouse Cyagen, China TOS170110KY1 .. shRNA targeting sequence: human EMP1-1#: CCGGCGCTACTGTTATTATGCTATTCTCGAGAATAGCATAATAACAGTAGC GTTTTTG Tsingke, China N/A shRNA targeting sequence: human EMP1-2#: CCGGCCACATCGCTACTGTTATTATCTCGAGATAATAACAGTAGCGATGTG GTTTTTG Tsingke, China N/A Primers for Real-time PCR, see Supplementary Table S5 Tsingke, China N/A Recombinant DNA pCMV-C-EGFP Beyotime D2626 pCMV-Emp1-EGFP Tsingke, China N/A pMSCV-GFP Addgene #21654 pMSCV-HA-Emp1 This paper N/A pMSCV-Flag-Cers2 This paper N/A pMSCV-Flag-mutCers2 This paper N/A pLKO.1-puro-CMV-GFP This paper N/A pLKO-shEMP1 This paper N/A pxPAX2 Addgene #12260 pMD2.G Addgene #12259 pCL-Eco Addgene #12371 Software and Algorithms GraphPad Prism 9 GraphPad Software https://www.graphpad .com/ FlowJo software_V10 FlowJo https://www.flowjo.co m/ GSEA_4.1.0 GSEA https://www.gseamsigdb.org/gsea/inde x.jsp PyMOL 2.6 DeLano Scientific LLC https://www.pymol.or g/ ..

    Software:

    Article Title: EMP1 safeguards hematopoietic stem cells by suppressing sphingolipid metabolism and alleviating endoplasmic reticulum stress
    Article Snippet: C57BL/6J mouse Cyagen, China NA CD45.1 mouse Cyagen, China NA Tie2-Cre mouse Cyagen, China NA Mx1-Cre mouse Cyagen, China NA Emp1fl/+ mouse Cyagen, China TOS170110KY1 .. shRNA targeting sequence: human EMP1-1#: CCGGCGCTACTGTTATTATGCTATTCTCGAGAATAGCATAATAACAGTAGC GTTTTTG Tsingke, China N/A shRNA targeting sequence: human EMP1-2#: CCGGCCACATCGCTACTGTTATTATCTCGAGATAATAACAGTAGCGATGTG GTTTTTG Tsingke, China N/A Primers for Real-time PCR, see Supplementary Table S5 Tsingke, China N/A Recombinant DNA pCMV-C-EGFP Beyotime D2626 pCMV-Emp1-EGFP Tsingke, China N/A pMSCV-GFP Addgene #21654 pMSCV-HA-Emp1 This paper N/A pMSCV-Flag-Cers2 This paper N/A pMSCV-Flag-mutCers2 This paper N/A pLKO.1-puro-CMV-GFP This paper N/A pLKO-shEMP1 This paper N/A pxPAX2 Addgene #12260 pMD2.G Addgene #12259 pCL-Eco Addgene #12371 Software and Algorithms GraphPad Prism 9 GraphPad Software https://www.graphpad .com/ FlowJo software_V10 FlowJo https://www.flowjo.co m/ GSEA_4.1.0 GSEA https://www.gseamsigdb.org/gsea/inde x.jsp PyMOL 2.6 DeLano Scientific LLC https://www.pymol.or g/ ..

    Protein Binding:

    Article Title: A Phosphoinositide Interacting Protein Coordinates Stress Precursor Activities
    Article Snippet: .. HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains (S14ΔCS) ( Ray et al ., 2022 ) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Article Title: A Stress-Induced PI3P Complex Controls Cell Autophagy in Erythroid Precursors
    Article Snippet: .. Plasmid Constructs 61 HA-tagged full-length Samd14, Samd14 lacking the SAM domain (S14ΔSAM), Samd14 lacking the capping 62 protein binding (CPB) domain (Samd14 ΔCPB), and Samd14 lacking both SAM and CPB domains 63 (S14ΔCS) (Ray et al., 2022) were cloned into mammalian expression plasmid pMSCV-Puro-IRES-GFP 64 (Addgene #21654) using BglII and EcoRI restriction digestion sites. ..

    Blocking Assay:

    Article Title: The Regulation of COX-2, ABCA1 and ABCG1 by the lncRNA PACERR links the inflammatory response and cholesterol homeostasis
    Article Snippet: Cells stably expressing the shRNAs were selected by using 5 μg ml −1 puromycin (Thermo Fisher Scientific). .. To create PACERR-overexpressing cell lines, PACERR gene block from IDT was cloned into the pMSCV-PIG vector (Addgene, 21654) and transfected into HEK293T cells with packaging vectors pCMV-VSV-G (Addgene, 8454) and pCMV-Gag-Pol (Cell Biolabs, RV-111). .. After 48 h, the culture medium was isolated and used to transduce THP-1 cells were selected with puromycin (5 μg ml −1 , Thermo Fisher Scientific).

    Transfection:

    Article Title: The Regulation of COX-2, ABCA1 and ABCG1 by the lncRNA PACERR links the inflammatory response and cholesterol homeostasis
    Article Snippet: Cells stably expressing the shRNAs were selected by using 5 μg ml −1 puromycin (Thermo Fisher Scientific). .. To create PACERR-overexpressing cell lines, PACERR gene block from IDT was cloned into the pMSCV-PIG vector (Addgene, 21654) and transfected into HEK293T cells with packaging vectors pCMV-VSV-G (Addgene, 8454) and pCMV-Gag-Pol (Cell Biolabs, RV-111). .. After 48 h, the culture medium was isolated and used to transduce THP-1 cells were selected with puromycin (5 μg ml −1 , Thermo Fisher Scientific).



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    Image Search Results


    a, HCT116 cells stably expressing BRIP1 R162Q were transiently transfected using PEI with empty vector (EV-EGFP) or RNaseH1-WT-eGFP. Transfection efficiency was assessed via EGFP fluorescence. b, immunoblot analysis confirming expression of GFP-tagged constructs in transfected cells. c, Immunofluorescence detection of R-loops using the S9.6 antibody in cells transfected with EGFP or EGFP-RNaseH1. d, Quantification of S9.6 mean fluorescence intensity (MFI) per nucleus. Data represent mean ± SEM of three independent experiments. e, Immunofluorescence detection of G-quadruplex (G4) structures using the BG4 antibody in cells transfected with EGFP or EGFP-RNaseH1. f, Quantification of BG4 fluorescence intensity per nucleus. Data represent mean ± SEM of three independent experiments. g, Representative DNA fiber assay images from HCT116 cells harboring BRIP1 R162Q transfected with empty vector (EV-eGFP) or RNaseH1-WT. DNA replication tracts were sequentially labeled with CldU (red) and IdU (green). h, Quantification of DNA fiber types. RNaseH1-WT expression reduced the proportion of stalled replication forks in cells harboring BRIP1 R162Q. i, While the overall fork speed was not significantly increased upon RNaseH1-WT expression, tracts displayed a more balanced distribution of CldU and IdU incorporation. j, Fork asymmetry analysis. RNaseH1-WT expression reduced fork asymmetry, indicating that left- and right-moving sister forks progressed at more similar speeds. Labeled tracks were visualized by confocal microscopy, and tract lengths were measured on raw LSM images. Lengths (µm) were converted to replication speed (kb/min) using a factor of 2.59 kb/µm. All data represent mean ± SEM from three independent experiments. At least 150 fibers per condition were analyzed in each replicate. Statistical significance was determined using paired two-tailed Student’s t-test (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant). c, e, Representative confocal images are shown.

    Journal: bioRxiv

    Article Title: Role of a childhood cancer-linked BRIP1/FANCJ germline variant in genomic instability and cancer cell vulnerability

    doi: 10.64898/2026.03.24.714005

    Figure Lengend Snippet: a, HCT116 cells stably expressing BRIP1 R162Q were transiently transfected using PEI with empty vector (EV-EGFP) or RNaseH1-WT-eGFP. Transfection efficiency was assessed via EGFP fluorescence. b, immunoblot analysis confirming expression of GFP-tagged constructs in transfected cells. c, Immunofluorescence detection of R-loops using the S9.6 antibody in cells transfected with EGFP or EGFP-RNaseH1. d, Quantification of S9.6 mean fluorescence intensity (MFI) per nucleus. Data represent mean ± SEM of three independent experiments. e, Immunofluorescence detection of G-quadruplex (G4) structures using the BG4 antibody in cells transfected with EGFP or EGFP-RNaseH1. f, Quantification of BG4 fluorescence intensity per nucleus. Data represent mean ± SEM of three independent experiments. g, Representative DNA fiber assay images from HCT116 cells harboring BRIP1 R162Q transfected with empty vector (EV-eGFP) or RNaseH1-WT. DNA replication tracts were sequentially labeled with CldU (red) and IdU (green). h, Quantification of DNA fiber types. RNaseH1-WT expression reduced the proportion of stalled replication forks in cells harboring BRIP1 R162Q. i, While the overall fork speed was not significantly increased upon RNaseH1-WT expression, tracts displayed a more balanced distribution of CldU and IdU incorporation. j, Fork asymmetry analysis. RNaseH1-WT expression reduced fork asymmetry, indicating that left- and right-moving sister forks progressed at more similar speeds. Labeled tracks were visualized by confocal microscopy, and tract lengths were measured on raw LSM images. Lengths (µm) were converted to replication speed (kb/min) using a factor of 2.59 kb/µm. All data represent mean ± SEM from three independent experiments. At least 150 fibers per condition were analyzed in each replicate. Statistical significance was determined using paired two-tailed Student’s t-test (*p < 0.05, **p < 0.01, ***p < 0.001, ns = not significant). c, e, Representative confocal images are shown.

    Article Snippet: For R-loop removal, cells were transiently transfected with an EGFP empty vector control (pEGFP-C1, Takara Bio, #632470), EGFP-tagged RNaseH1 wild-type (WT), or the catalytically inactive RNaseH1 D145N mutant as indicated.

    Techniques: Stable Transfection, Expressing, Transfection, Plasmid Preparation, Fluorescence, Western Blot, Construct, Immunofluorescence, Labeling, Confocal Microscopy, Two Tailed Test