quantitative whole transcriptome rna sequencing (10X Genomics)

About

News

Press Release

Team

Advisors

Partners

Contact

Bioz Stars

Bioz vStars

Buy from Supplier

Structured Review

10X Genomics quantitative whole transcriptome rna sequencing
Quantitative Whole Transcriptome Rna Sequencing, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/digital+spatial+profiling+spatial+transcriptomics+sequencing/visium/pmc10245699-26-16-20
Average 86 stars, based on 1 article reviews

quantitative whole transcriptome rna sequencing - by Bioz Stars, 2026-09

86/100 stars

Images

Spatial Transcriptomics:

Article Title: GenOT: generative optimal transport enables spatiotemporal interpolation and generation in cross-platform spatial transcriptomics.
Article Snippet: .. The typical evolution of spatial transcriptomics technologies is characterized by continuous improvement in spatial resolution, ranging from 10x Genomics Visium (55 μm spot resolution, AR TIC LE IN PR ES S capturing approximately 1-10 cells per spot) [5], to Slide-seq (~10 μm, near-cellular resolution) [6], and finally to Stereo-seq (0.22 μm, subcellular resolution) [7]. ..

Article Title: Understanding nerve–tumor interactions: From basic biology to therapeutic innovation
Article Snippet: .. 2D spatial transcriptomics, such as Visium (10x Genomics) and MERFISH (Multiplexed Error-Robust Fluorescence In Situ Hybridization), enable the precise mapping of transcriptomes to their corresponding locations in a 2D plane., , Compared with high-plex protein labeling, 2D spatial transcriptomics offers high-resolution spatial gene expression data and facilitates the discovery of novel spatially regulated genes within the TME. ..

Article Title: GLP1-E2 therapy delays autoimmune diabetes in late-stage prediabetic NOD mice and potentiates low-dose anti-CD3 therapy for enhanced disease protection.
Article Snippet: .. Analytically, we employed 10X Genomics Visium for spatial transcriptomics, which lacks true single-cell resolution compared with newer platforms such as Visium HD or Xenium. ..

Article Title: Analysis of unmapped RNA-seq data from cancer spatial transcriptome toward characterizing cancer microbiome.
Article Snippet: .. Recently, spatial transcriptomics, especially Visium (10X genomics, USA), has been garnering significant attention in cancer research. ..

Fluorescence:

In Situ Hybridization:

Labeling:

Gene Expression:

other:

Article Title: Integrative single-cell and spatial multi-Omics analyses identify NETs-driven colon cancer subtypes with distinct metabolic features and prognostic implications.
Article Snippet: ACC, Adrenocortical Carcinoma; ARRDC1, Arrestin Domain Containing 1; AUC, Area Under the Curve; AUCell, Area Under the Curve Cell-level scoring; BH, Benjamini–Hochberg; BLCA, Bladder Urothelial Carcinoma; AR TIC LE IN PR ES S BRCA, Breast Cancer; CESC, Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma; CHOL, Cholangiocarcinoma; CI, Confidence Interval; CNV, Copy Number Variation; COAD, Colon Adenocarcinoma; CRC, Colorectal Cancer; CSS, Cancer-Specific Survival; CXCR4, C-X-C Chemokine Receptor Type 4; DEGs, Differentially Expressed Genes; DUSP5, Dual-Specificity Phosphatase 5; ELISA, Enzyme-Linked Immunosorbent Assay; eQTL, Expression Quantitative Trait Locus; ESCA, Esophageal Carcinoma; FDR, False Discovery Rate; GDSC, Genomics of Drug Sensitivity in Cancer; GEO, Gene Expression Omnibus; GO, Gene Ontology; GSEA, Gene Set Enrichment Analysis; GWAS, Genome-Wide Association Study; HNSC, Head and Neck Squamous Cell Carcinoma; HPA, Human Protein Atlas; HR, Hazard Ratio; IC50, Half-Maximal Inhibitory Concentration; ICIs, Immune Checkpoint Inhibitors; KEGG, Kyoto Encyclopedia of Genes and Genomes; KICH, Kidney Chromophobe; KIRC, Kidney Renal Clear Cell Carcinoma; KM, Kaplan–Meier; AR TIC LE IN PR ES S LASSO, Least Absolute Shrinkage and Selection Operator; LGG, Low-Grade Glioma; LUAD, Lung Adenocarcinoma; MAPK, Mitogen-Activated Protein Kinase; MD, Molecular Dynamics; MESO, Mesothelioma; MIA, Multimodal Intersection Analysis; MIF, Macrophage Migration Inhibitory Factor; NETs, Neutrophil Extracellular Traps; OS, Overall Survival; PCA, Principal Component Analysis; READ, Rectal Adenocarcinoma; RMSD, Root Mean Square Deviation; ROC, Receiver Operating Characteristic; ROS, Reactive Oxygen Species; SARC, Sarcoma; scRNA-seq, Single-Cell RNA Sequencing; SLC2A3, Solute Carrier Family 2 Member 3; SNV, Single Nucleotide Variant; ssGSEA, Single-Sample Gene Set Enrichment Analysis; STAD, Stomach Adenocarcinoma; TAMs, Tumor-Associated Macrophages; TANs, Tumor-Associated Neutrophils; TCGA, The Cancer Genome Atlas; THCA, Thyroid Carcinoma; THYM, Thymoma; TIDE, Tumor Immune Dysfunction and Exclusion; TME, Tumor Microenvironment; TPM, Transcripts Per Million; AR TIC LE IN PR ES S Tregs, Regulatory T Cells; TUBB2A, Tubulin Beta Class 2A; UCEC, Uterine Corpus Endometrial Carcinoma; UMI, Unique Molecular Identifier; UVM, Uveal Melanoma; Visium, 10x Genomics Visium

Single Cell:

Expressing:

Article Title: SpatialBench : Comparative cross-platform benchmarking of high-resolution spatial transcriptomics using matched mouse lymphoid tissue
Article Snippet: .. The original Visium (10x Genomics) became the most widely adopted sST platform ( ) , offering transcriptome-wide coverage while aggregating expression from multiple cells per 55 μm resolution that aggregates expression from multiple cells per spot ( , ) . ..

Review