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Biotechnology Information ncbi gene expression omnibus geo database
Ncbi Gene Expression Omnibus Geo Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Gene Expression:

Article Title: Synovial transcriptomic biomarkers predict structural severity in equine osteochondral fragment-induced experimental osteoarthritis.
Article Snippet: .. The names of the repository and accession number can be found at the National Center for Biotechnology Information Gene Expression Omnibus public genomic data repository, with accession nos. ..

Article Title: Single-cell RNA sequencing profiles drug activity within spatially engineered 3D cultures.
Article Snippet: .. The scRNA-seq datasets generated in this study have been deposited in the National Centre for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE245416 [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245416]. ..

Article Title: Cepharanthine suppresses lung adenocarcinoma through targeting glutathione peroxidase 4
Article Snippet: .. Microarray datasets pertinent to LUAD were sourced from the Gene Expression Omnibus (GEO) database, a comprehensive public gene expression repository established by the National Center for Biotechnology Information in the United States ( https://www.ncbi.nlm.nih.gov/geo/ ). .. Specifically, the GSE10799 dataset ( ) from the GPL570 platform (‘HG-U133_Plus_2 Affymetrix Human Genome U133 Plus 2.0 Array’) was accessed, encompassing 16 LUAD samples and 3 normal samples.

Article Title: APE1 inhibition-promoted pyroptosis triggers T-cell infiltration and enhances anti-tumor immunity in NSCLC
Article Snippet: .. RNA sequencing data that support the findings of this study have been deposited in the National Center for Biotechnology Information (NCBI)'s Gene Expression Omnibus (GEO) ( GSE220807 ). ..

Article Title: A Phase Ib Trial of Copanlisib in Combination with Venetoclax in Patients with Relapsed or Refractory B-Cell Non-Hodgkin Lymphoma-SAKK 66/18 Trial.
Article Snippet: .. Expression data will be available in the National Center for Biotechnology Information Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo). ..

Generated:

Article Title: Single-cell RNA sequencing profiles drug activity within spatially engineered 3D cultures.
Article Snippet: .. The scRNA-seq datasets generated in this study have been deposited in the National Centre for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE245416 [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245416]. ..

Microarray:

Article Title: Cepharanthine suppresses lung adenocarcinoma through targeting glutathione peroxidase 4
Article Snippet: .. Microarray datasets pertinent to LUAD were sourced from the Gene Expression Omnibus (GEO) database, a comprehensive public gene expression repository established by the National Center for Biotechnology Information in the United States ( https://www.ncbi.nlm.nih.gov/geo/ ). .. Specifically, the GSE10799 dataset ( ) from the GPL570 platform (‘HG-U133_Plus_2 Affymetrix Human Genome U133 Plus 2.0 Array’) was accessed, encompassing 16 LUAD samples and 3 normal samples.

Article Title: Quercetin Affects Carcinogenic Phenotype of Breast and Lung Cancer Cells Differentially Through Sterol Regulation Mediated by MALAT1 Perturbation.
Article Snippet: Targeting MALAT1 in cancer treatment is an attractive strategy due to the undebatable role of this lncRNA in the disease.. Small molecules toward this noncoding RNA have, in fact, entered preclinical trials, without resulting in a robust demonstration in favor of their use in therapy.. To test the robustness of this method, we asked how aspects of carcinogenesis get affected when knocking down MALAT1 in different cell lines.

RNA Sequencing:

Article Title: APE1 inhibition-promoted pyroptosis triggers T-cell infiltration and enhances anti-tumor immunity in NSCLC
Article Snippet: .. RNA sequencing data that support the findings of this study have been deposited in the National Center for Biotechnology Information (NCBI)'s Gene Expression Omnibus (GEO) ( GSE220807 ). ..

Article Title: Quercetin Affects Carcinogenic Phenotype of Breast and Lung Cancer Cells Differentially Through Sterol Regulation Mediated by MALAT1 Perturbation.
Article Snippet: Targeting MALAT1 in cancer treatment is an attractive strategy due to the undebatable role of this lncRNA in the disease.. Small molecules toward this noncoding RNA have, in fact, entered preclinical trials, without resulting in a robust demonstration in favor of their use in therapy.. To test the robustness of this method, we asked how aspects of carcinogenesis get affected when knocking down MALAT1 in different cell lines.

Expressing:

Article Title: Quercetin Affects Carcinogenic Phenotype of Breast and Lung Cancer Cells Differentially Through Sterol Regulation Mediated by MALAT1 Perturbation.
Article Snippet: Targeting MALAT1 in cancer treatment is an attractive strategy due to the undebatable role of this lncRNA in the disease.. Small molecules toward this noncoding RNA have, in fact, entered preclinical trials, without resulting in a robust demonstration in favor of their use in therapy.. To test the robustness of this method, we asked how aspects of carcinogenesis get affected when knocking down MALAT1 in different cell lines.

Article Title: A Phase Ib Trial of Copanlisib in Combination with Venetoclax in Patients with Relapsed or Refractory B-Cell Non-Hodgkin Lymphoma-SAKK 66/18 Trial.
Article Snippet: .. Expression data will be available in the National Center for Biotechnology Information Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo). ..



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