Review



datalad-based fairly big workflow for image data processing  (DataLad Project)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    DataLad Project datalad-based fairly big workflow for image data processing
    Datalad Based Fairly Big Workflow For Image Data Processing, supplied by DataLad Project, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/datalad+software/pmc10957178-376-19-14
    Average 90 stars, based on 1 article reviews
    datalad-based fairly big workflow for image data processing - by Bioz Stars, 2026-09
    90/100 stars

    Images

    Related Articles

    other:

    Article Title: Teaching Research Data Management with DataLad: A Multi-year, Multi-domain Effort
    Article Snippet: The ability of the documentation to sequentially execute code and record its outcomes allows using the Handbook as an integration test for the DataLad software in addition to a user guide.

    Article Title: A latent clinical-anatomical dimension relating metabolic syndrome to brain structure and cognition
    Article Snippet: To facilitate large-scale data management while ensuring provenance tracking and reproducibility, we employed the DataLad-based FAIRly big workflow for image data processing ( ).

    Article Title: A latent clinical-anatomical dimension relating metabolic syndrome to brain structure and cognition
    Article Snippet: To facilitate large-scale data management while ensuring provenance tracking and reproducibility, we employed the DataLad-based FAIRly big workflow for image data processing [ ].

    Article Title: In defense of decentralized research data management
    Article Snippet: Institute staff can stage individual data resources on the JSC storage systems, and the DataLad software can transparently obtain dataset content on this independently operated resource without requiring individual adjustments of datasets, or analysis scripts.

    Article Title: DataLad: distributed system for joint management of code, data, and their relationship
    Article Snippet: Some established extensions include: datalad-container ( ) to simplify management and use of Docker and Singularity containers typically containing complete computational environments datalad-crawler ( ) to automate creation and updates of DataLad datasets from external resources datalad-neuroimaging ( ) to provide neuroimaging-specific procedures and metadata extractors datalad-osf ( ) to collaborate using DataLad through the Open Science Framework (OSF) datalad-ukbiobank ( ) obtain and BIDS-normalize imaging data releases of the UKBiobank The same mechanism of extensions is used for rapid development of new functionality to later be moved into the core tool (e.g., datalad-metalad ).

    Microscopy:

    Article Title: How to establish and maintain a multimodal animal research dataset using DataLad
    Article Snippet: .. If users have their complete data in alternative storage solutions such as on XNAT or PACS server for radiological data or OMERO as for microscopy data, there are dedicated DataLad extensions ( https://docs.datalad.org/ ), or additional extensions can be developed with minimal effort to support additional services. ..

    Article Title: How to establish and maintain a multimodal animal research dataset using DataLad.
    Article Snippet: .. If users have their complete data in alternative storage solutions such as on XNAT or PACS server for radiological data23 or OMERO24 as for microscopy data, there are dedicated DataLad extensions (https://docs.datalad.org/), or additional extensions can be developed with minimal effort to support additional services. ..



    Similar Products

    cryoem data processing workflow  (Thermo Fisher)
    99
    Thermo Fisher cryoem data processing workflow
    Cryoem Data Processing Workflow, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/Collagen/pmc12354898__41467_2025_62923_MOESM1_ESM-1-3-3
    Average 99 stars, based on 1 article reviews
    cryoem data processing workflow - by Bioz Stars, 2026-09
    99/100 stars
    		  Buy from Supplier
    data processing workflow  (Mestrelab Research)
    86
    Mestrelab Research data processing workflow
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Data Processing Workflow, supplied by Mestrelab Research, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/data+processing+workflow/pmc13133275-196-1-20
    Average 86 stars, based on 1 article reviews
    data processing workflow - by Bioz Stars, 2026-09
    86/100 stars
    		  Buy from Supplier
    data processing workflows  (Unifi Inc)
    86
    Unifi Inc data processing workflows
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Data Processing Workflows, supplied by Unifi Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/data+processing+workflows/10__1016_slash_j__jpha__2025__101467-134-7-2
    Average 86 stars, based on 1 article reviews
    data processing workflows - by Bioz Stars, 2026-09
    86/100 stars
    		  Buy from Supplier
    data processing workflow  (KNIME GmbH)
    90
    KNIME GmbH data processing workflow
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Data Processing Workflow, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/data+processing+workflow/pmc12172290-492-4-9
    Average 90 stars, based on 1 article reviews
    data processing workflow - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    workflow for processing illumina deep sequencing chip-seq data  (Illumina Inc)
    90
    Illumina Inc workflow for processing illumina deep sequencing chip-seq data
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Workflow For Processing Illumina Deep Sequencing Chip Seq Data, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/chip+seq+libraries+for+illumina+sequencing/pmc11711613__41467_2024_55598_MOESM3_ESM-12-2-5
    Average 90 stars, based on 1 article reviews
    workflow for processing illumina deep sequencing chip-seq data - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    data processing workflow  (Unifi Inc)
    90
    Unifi Inc data processing workflow
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Data Processing Workflow, supplied by Unifi Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/data+processing+software/10__3390_slash_horticulturae10121262-89-2-2
    Average 90 stars, based on 1 article reviews
    data processing workflow - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    custom automated experimental design and data processing workflow  (MathWorks Inc)
    90
    MathWorks Inc custom automated experimental design and data processing workflow
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Custom Automated Experimental Design And Data Processing Workflow, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/pm39288179-105-29-33
    Average 90 stars, based on 1 article reviews
    custom automated experimental design and data processing workflow - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    datalad-based fairly big workflow for image data processing  (DataLad Project)
    90
    DataLad Project datalad-based fairly big workflow for image data processing
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Datalad Based Fairly Big Workflow For Image Data Processing, supplied by DataLad Project, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/datalad+software/pmc10957178-376-19-14
    Average 90 stars, based on 1 article reviews
    datalad-based fairly big workflow for image data processing - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    cryo em data processing workflow  (Thermo Fisher)
    99
    Thermo Fisher cryo em data processing workflow
    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed <t>Workflow</t> <t>for</t> <t>Intelligent</t> Structural Elucidation (WISE).
    Cryo Em Data Processing Workflow, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflows/SUCROSE+EP%2FBP%2FNF+12KG/pm37932265-240-1-1
    Average 99 stars, based on 1 article reviews
    cryo em data processing workflow - by Bioz Stars, 2026-09
    99/100 stars
    		  Buy from Supplier

    Image Search Results


    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed Workflow for Intelligent Structural Elucidation (WISE).

    Journal: npj Antimicrobials and Resistance

    Article Title: Accelerating natural product discovery with linked MS-genomics and language/transformer-based models

    doi: 10.1038/s44259-026-00206-7

    Figure Lengend Snippet: Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed Workflow for Intelligent Structural Elucidation (WISE).

    Article Snippet: The data processing Workflow for Intelligent Structural Elucidation (WISE) is partially based on Mestrenova v15.0.1-35756 which is commercially available from Mestrelab Research S. L. ( www.mestrelab.com ).

    Techniques: Biomarker Discovery

    A Overview of the cheminformatics analysis workflow (WISE) to annotate individual molecules from raw liquid chromatography-tandem mass spectral (LC-MS/MS) data of fermentation extracts. B Distribution of WISE scores for correct structures (Real) versus isobaric decoy structures (within 0.005 m/z) with different molecular formulae (Decoy) from the Critical Assessment for Small Molecule Identification (CASMI2022) dataset. Low and high WISE score thresholds of 0.35 and 0.65 respectively are annotated for reference. C Receiver Operating Characteristic (ROC) curve demonstrating the discrimination of correct structures from decoys with differing molecular formulae within a 0.005 m/z window. AUC = Area Under Curve. CI = Confidence Interval. Detailed data in Table .

    Journal: npj Antimicrobials and Resistance

    Article Title: Accelerating natural product discovery with linked MS-genomics and language/transformer-based models

    doi: 10.1038/s44259-026-00206-7

    Figure Lengend Snippet: A Overview of the cheminformatics analysis workflow (WISE) to annotate individual molecules from raw liquid chromatography-tandem mass spectral (LC-MS/MS) data of fermentation extracts. B Distribution of WISE scores for correct structures (Real) versus isobaric decoy structures (within 0.005 m/z) with different molecular formulae (Decoy) from the Critical Assessment for Small Molecule Identification (CASMI2022) dataset. Low and high WISE score thresholds of 0.35 and 0.65 respectively are annotated for reference. C Receiver Operating Characteristic (ROC) curve demonstrating the discrimination of correct structures from decoys with differing molecular formulae within a 0.005 m/z window. AUC = Area Under Curve. CI = Confidence Interval. Detailed data in Table .

    Article Snippet: The data processing Workflow for Intelligent Structural Elucidation (WISE) is partially based on Mestrenova v15.0.1-35756 which is commercially available from Mestrelab Research S. L. ( www.mestrelab.com ).

    Techniques: Liquid Chromatography, Liquid Chromatography with Mass Spectroscopy

    A Elucidated biosynthetic gene cluster BGC0000709, responsible for neomycin production. B Similarity (%) of each embedded protein and sequence similarity (%) of the top-scoring protein matches. C Predicted protein structures of the top matches for Fe-S oxidoreductase ( CAF33317 ) from neomycin BGC. D Heatmap of WISE scores for strain-media combinations derived from the liquid chromatography-tandem mass spectrometry (LC-MS/MS) data of fermentation extracts. Only strains with at least 1 media combination with non-zero WISE score are shown. Activated strains (if any) are referred to by their parent strain instead of individually (details of the activated strains are in Table ). E Structure of neomycin B. F Workflow of the co-occurrence strategy and matrix ranking table with 0.35 WISE score and 0.75 PLM score cutoff. Strains that have been cross validated are highlighted in green or yellow, indicating whether these compounds were present (green) or absent (yellow). Lines indicating higher confidence thresholds of 0.65 WISE score (in red) and 2.5 PLM score (in blue) are also included.

    Journal: npj Antimicrobials and Resistance

    Article Title: Accelerating natural product discovery with linked MS-genomics and language/transformer-based models

    doi: 10.1038/s44259-026-00206-7

    Figure Lengend Snippet: A Elucidated biosynthetic gene cluster BGC0000709, responsible for neomycin production. B Similarity (%) of each embedded protein and sequence similarity (%) of the top-scoring protein matches. C Predicted protein structures of the top matches for Fe-S oxidoreductase ( CAF33317 ) from neomycin BGC. D Heatmap of WISE scores for strain-media combinations derived from the liquid chromatography-tandem mass spectrometry (LC-MS/MS) data of fermentation extracts. Only strains with at least 1 media combination with non-zero WISE score are shown. Activated strains (if any) are referred to by their parent strain instead of individually (details of the activated strains are in Table ). E Structure of neomycin B. F Workflow of the co-occurrence strategy and matrix ranking table with 0.35 WISE score and 0.75 PLM score cutoff. Strains that have been cross validated are highlighted in green or yellow, indicating whether these compounds were present (green) or absent (yellow). Lines indicating higher confidence thresholds of 0.65 WISE score (in red) and 2.5 PLM score (in blue) are also included.

    Article Snippet: The data processing Workflow for Intelligent Structural Elucidation (WISE) is partially based on Mestrenova v15.0.1-35756 which is commercially available from Mestrelab Research S. L. ( www.mestrelab.com ).

    Techniques: Sequencing, Derivative Assay, Liquid Chromatography, Mass Spectrometry, Liquid Chromatography with Mass Spectroscopy