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Inscopix Inc data processing software idps v1.9.1
Data Processing Software Idps V1.9.1, supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+processing+software+idps/data+processing+software+idps+v1+9+1/pmc12138423-292-23-23
Average 90 stars, based on 1 article reviews
data processing software idps v1.9.1 - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Activity Assay:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Software:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

In Vivo:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Imaging:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Injection:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Microscopy:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Expressing:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Fluorescence:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.

Control:

Article Title: Basal ganglia-spinal cord pathway that commands locomotor gait asymmetries in mice.
Article Snippet: Inscopix Data Processing software (IDPS v1.6.0, Inscopix) was used for post-processing of endoscopic Ca2+ imaging data, with further analysis using custom MATLAB scripts.

Article Title: Encoding of female mating dynamics by a hypothalamic line attractor.
Article Snippet: This is a PDF file of a peer-reviewed paper that has been accepted for publication.. Although unedited, the content has been subjected to preliminary formatting.. Nature is providing this early version of the typeset paper as a service to our authors and readers.

Article Title: Cadmium inhibits calcium activity in hippocampal CA1 neurons of freely moving mice.
Article Snippet: Cadmium (Cd) is a ubiquitous toxic heavy metal and a potential neurotoxicant due to its wide use in industrial manufacturing processes and commercial products, including fertilizers.. The general population is exposed to Cd through food and smoking due to high transfer rates of Cd from contaminated soil.. Cd has been shown to mimic calcium ions (Ca) and interfere with intracellular Ca levels and Ca signaling in in vitro studies.

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming
Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Article Title: Lateral parabrachial FoxP2 neurons regulate respiratory responses to hypercapnia
Article Snippet: Calcium recording files were spatially filtered and motion corrected for brain movements using the Inscopix data processing (IDPS ver1.6).

Article Title: A hypothalamic circuit underlying the dynamic control of social homeostasis.
Article Snippet: In the first step, we processed the raw image data using the Inscopix data processing software (IDPS v.1.8.0.3519).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals
Article Snippet: Motion Correction: Apply motion correction to remove movement artifacts in Inscopix Data Processing Software (IDPS, v1.9.1). c. Cell Detection: Use PCA/ICA-based methods in Inscopix Data Processing Software (IDPS, v1.9.1) for cell detection. d. Manual Inspection: Inspect spatial footprints of detected cells in the XY image to ensure accurate identification. e. Identify and confirm the Ca 2+ transients based on rapid rise and gradual decay patterns ( ).

Article Title: Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals.
Article Snippet: Mindaye et al., STAR Protocols 6, 103800 June 20, 2025 a 2025 The Author(s).. Published by Here, we present a protocol to study neural circuits between the paraventricular thalamus (PVA) and the bed nucleus of the stria terminalis (BNST) in mice by combining calcium imaging with optogenetic stimulation of axon terminals.. We describe steps for delivering GCaMP6f and ChrimsonR viruses and implanting the gradient-index (GRIN) lens for use with an Inscopix microscope.



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Inscopix Inc data processing software idps 1.8.0
a , Simultaneous in vivo calcium imaging and optogenetic stimulation under free-moving conditions. AAV-syn-GCaMP6f and AAV-syn-ChrimsonR were co-injected into the DG, followed by GRIN-lens implantation. An integrated miniature microscope (nVoke; <t>Inscopix)</t> enabled large-scale cellular-resolution Ca 2+ imaging and optogenetic stimulation. b, Left: Expression of GCaMP6f and ChrimsonR in the DG. Right: Max projection of relative fluorescence change (Δ F / F ) of Ca 2+ transients from all imaging frames during the first 30 min, showing representative active neurons. c, Top: Experimental design of Ca 2+ imaging combined with optogenetic stimulation during the open field test. Each 50-min session consisted of 30-min Ca 2+ imaging (used for the following analysis), 5-min optogenetic stimulation, and 15-min post-stimulation recording. This was repeated for 10 days. No light was introduced to mice in the No Stim group. Bottom: Δ F / F traces from 15 representative neurons (scale bar, 10% Δ F / F ). <t>Data</t> from 25 to 38 min of a 50-min session are shown. d, Distance traveled during the first 30 min e, Average Ca 2+ transient rate during the first 30 min. f, Distribution of spatial information for the No Stim (grey curve) and Stim×10 groups (red curve). The vertical axis represents the frequency of distribution, with the dotted line indicating the criterion for place cells (top 95% percentile of the shuffled distribution; see Methods section). Bar graph indicates proportion of place cells. g, Representative results of position decoding using Ca 2+ imaging data. The first 30 min was split into two 15-min halves for training and test data for decoding. Black/red lines: observed position; grey/pink lines: decoded position. h, Decoding accuracy (mae; mean absolute error, cm). Dotted lines: shuffled control. Two-way repeated measures ANOVA: Stim type, F (1, 8) = 6.49, P = 0.034; Day, F (2, 16) = 2.89, P = 0.085; Stim type × Day, F (2, 16) = 1.11, P = 0.353. Bonferroni correction for multiple comparisons was performed, * P < 0.05. i, Same as f , but for speed information and speed cells. The dotted line indicates the criterion for speed cells (top 99% percentile of the shuffled distribution). j, Same as g , but for speed decoding. k, Same as h , but for speed decoding accuracy. Two-way repeated measures ANOVA: Stim type, F (1, 8) =4.02, P = 0.080; Day, F (2, 16) = 4.87, P = 0.022; Day×Stim type, F (2, 16) = 3.98, P = 0.039. Bonferroni correction for multiple comparisons was performed, * P < 0.05.
Data Processing Software Idps 1.8.0, supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Inscopix Inc idps inscopix data 721 processing software
a , Simultaneous in vivo calcium imaging and optogenetic stimulation under free-moving conditions. AAV-syn-GCaMP6f and AAV-syn-ChrimsonR were co-injected into the DG, followed by GRIN-lens implantation. An integrated miniature microscope (nVoke; <t>Inscopix)</t> enabled large-scale cellular-resolution Ca 2+ imaging and optogenetic stimulation. b, Left: Expression of GCaMP6f and ChrimsonR in the DG. Right: Max projection of relative fluorescence change (Δ F / F ) of Ca 2+ transients from all imaging frames during the first 30 min, showing representative active neurons. c, Top: Experimental design of Ca 2+ imaging combined with optogenetic stimulation during the open field test. Each 50-min session consisted of 30-min Ca 2+ imaging (used for the following analysis), 5-min optogenetic stimulation, and 15-min post-stimulation recording. This was repeated for 10 days. No light was introduced to mice in the No Stim group. Bottom: Δ F / F traces from 15 representative neurons (scale bar, 10% Δ F / F ). <t>Data</t> from 25 to 38 min of a 50-min session are shown. d, Distance traveled during the first 30 min e, Average Ca 2+ transient rate during the first 30 min. f, Distribution of spatial information for the No Stim (grey curve) and Stim×10 groups (red curve). The vertical axis represents the frequency of distribution, with the dotted line indicating the criterion for place cells (top 95% percentile of the shuffled distribution; see Methods section). Bar graph indicates proportion of place cells. g, Representative results of position decoding using Ca 2+ imaging data. The first 30 min was split into two 15-min halves for training and test data for decoding. Black/red lines: observed position; grey/pink lines: decoded position. h, Decoding accuracy (mae; mean absolute error, cm). Dotted lines: shuffled control. Two-way repeated measures ANOVA: Stim type, F (1, 8) = 6.49, P = 0.034; Day, F (2, 16) = 2.89, P = 0.085; Stim type × Day, F (2, 16) = 1.11, P = 0.353. Bonferroni correction for multiple comparisons was performed, * P < 0.05. i, Same as f , but for speed information and speed cells. The dotted line indicates the criterion for speed cells (top 99% percentile of the shuffled distribution). j, Same as g , but for speed decoding. k, Same as h , but for speed decoding accuracy. Two-way repeated measures ANOVA: Stim type, F (1, 8) =4.02, P = 0.080; Day, F (2, 16) = 4.87, P = 0.022; Day×Stim type, F (2, 16) = 3.98, P = 0.039. Bonferroni correction for multiple comparisons was performed, * P < 0.05.
Idps Inscopix Data 721 Processing Software, supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+processing+software+idps/idps+inscopix+data+721+processing+software/pm40157920-532-8-9
Average 90 stars, based on 1 article reviews
idps inscopix data 721 processing software - by Bioz Stars, 2026-10
90/100 stars
  Buy from Supplier

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a , Simultaneous in vivo calcium imaging and optogenetic stimulation under free-moving conditions. AAV-syn-GCaMP6f and AAV-syn-ChrimsonR were co-injected into the DG, followed by GRIN-lens implantation. An integrated miniature microscope (nVoke; Inscopix) enabled large-scale cellular-resolution Ca 2+ imaging and optogenetic stimulation. b, Left: Expression of GCaMP6f and ChrimsonR in the DG. Right: Max projection of relative fluorescence change (Δ F / F ) of Ca 2+ transients from all imaging frames during the first 30 min, showing representative active neurons. c, Top: Experimental design of Ca 2+ imaging combined with optogenetic stimulation during the open field test. Each 50-min session consisted of 30-min Ca 2+ imaging (used for the following analysis), 5-min optogenetic stimulation, and 15-min post-stimulation recording. This was repeated for 10 days. No light was introduced to mice in the No Stim group. Bottom: Δ F / F traces from 15 representative neurons (scale bar, 10% Δ F / F ). Data from 25 to 38 min of a 50-min session are shown. d, Distance traveled during the first 30 min e, Average Ca 2+ transient rate during the first 30 min. f, Distribution of spatial information for the No Stim (grey curve) and Stim×10 groups (red curve). The vertical axis represents the frequency of distribution, with the dotted line indicating the criterion for place cells (top 95% percentile of the shuffled distribution; see Methods section). Bar graph indicates proportion of place cells. g, Representative results of position decoding using Ca 2+ imaging data. The first 30 min was split into two 15-min halves for training and test data for decoding. Black/red lines: observed position; grey/pink lines: decoded position. h, Decoding accuracy (mae; mean absolute error, cm). Dotted lines: shuffled control. Two-way repeated measures ANOVA: Stim type, F (1, 8) = 6.49, P = 0.034; Day, F (2, 16) = 2.89, P = 0.085; Stim type × Day, F (2, 16) = 1.11, P = 0.353. Bonferroni correction for multiple comparisons was performed, * P < 0.05. i, Same as f , but for speed information and speed cells. The dotted line indicates the criterion for speed cells (top 99% percentile of the shuffled distribution). j, Same as g , but for speed decoding. k, Same as h , but for speed decoding accuracy. Two-way repeated measures ANOVA: Stim type, F (1, 8) =4.02, P = 0.080; Day, F (2, 16) = 4.87, P = 0.022; Day×Stim type, F (2, 16) = 3.98, P = 0.039. Bonferroni correction for multiple comparisons was performed, * P < 0.05.

Journal: bioRxiv

Article Title: Repetitive Neuronal Activation Regulates Cellular Maturation State via Nuclear Reprogramming

doi: 10.1101/2025.05.02.651848

Figure Lengend Snippet: a , Simultaneous in vivo calcium imaging and optogenetic stimulation under free-moving conditions. AAV-syn-GCaMP6f and AAV-syn-ChrimsonR were co-injected into the DG, followed by GRIN-lens implantation. An integrated miniature microscope (nVoke; Inscopix) enabled large-scale cellular-resolution Ca 2+ imaging and optogenetic stimulation. b, Left: Expression of GCaMP6f and ChrimsonR in the DG. Right: Max projection of relative fluorescence change (Δ F / F ) of Ca 2+ transients from all imaging frames during the first 30 min, showing representative active neurons. c, Top: Experimental design of Ca 2+ imaging combined with optogenetic stimulation during the open field test. Each 50-min session consisted of 30-min Ca 2+ imaging (used for the following analysis), 5-min optogenetic stimulation, and 15-min post-stimulation recording. This was repeated for 10 days. No light was introduced to mice in the No Stim group. Bottom: Δ F / F traces from 15 representative neurons (scale bar, 10% Δ F / F ). Data from 25 to 38 min of a 50-min session are shown. d, Distance traveled during the first 30 min e, Average Ca 2+ transient rate during the first 30 min. f, Distribution of spatial information for the No Stim (grey curve) and Stim×10 groups (red curve). The vertical axis represents the frequency of distribution, with the dotted line indicating the criterion for place cells (top 95% percentile of the shuffled distribution; see Methods section). Bar graph indicates proportion of place cells. g, Representative results of position decoding using Ca 2+ imaging data. The first 30 min was split into two 15-min halves for training and test data for decoding. Black/red lines: observed position; grey/pink lines: decoded position. h, Decoding accuracy (mae; mean absolute error, cm). Dotted lines: shuffled control. Two-way repeated measures ANOVA: Stim type, F (1, 8) = 6.49, P = 0.034; Day, F (2, 16) = 2.89, P = 0.085; Stim type × Day, F (2, 16) = 1.11, P = 0.353. Bonferroni correction for multiple comparisons was performed, * P < 0.05. i, Same as f , but for speed information and speed cells. The dotted line indicates the criterion for speed cells (top 99% percentile of the shuffled distribution). j, Same as g , but for speed decoding. k, Same as h , but for speed decoding accuracy. Two-way repeated measures ANOVA: Stim type, F (1, 8) =4.02, P = 0.080; Day, F (2, 16) = 4.87, P = 0.022; Day×Stim type, F (2, 16) = 3.98, P = 0.039. Bonferroni correction for multiple comparisons was performed, * P < 0.05.

Article Snippet: To extract the activity patterns of individual DG neurons from the obtained fluorescent images, we used Inscopix Data Processing Software (IDPS 1.8.0).

Techniques: In Vivo, Imaging, Injection, Microscopy, Expressing, Fluorescence, Control